Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL17A1Q9UMD9 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL17A1Q9UMD9 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL17A1Q9UMD9 CD36-221ENST00000534394 1741 ntTSL 2 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 RNU6-433P-201ENST00000363216 104 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL17A1Q9UMD9 RNU2-8P-201ENST00000410727 190 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 SNRPEP10-201ENST00000420249 274 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 MTCO2P5-201ENST00000422621 426 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC073335.1-201ENST00000427776 363 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL17A1Q9UMD9 RPL7P12-201ENST00000446719 750 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AL392103.1-201ENST00000447000 198 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 FABP3P2-201ENST00000453169 399 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC012158.1-204ENST00000483430 465 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC108022.1-201ENST00000493466 478 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC005741.1-201ENST00000511094 432 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC010493.1-201ENST00000513479 292 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC022868.1-201ENST00000517767 391 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC027309.2-201ENST00000520566 192 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 OR5M7P-201ENST00000526140 972 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC090751.1-201ENST00000566966 267 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC080078.3-201ENST00000605407 463 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC6□□□□□ -1.45
COL17A1Q9UMD9 MTCO1P14-201ENST00000441695 1559 ntBASIC6□□□□□ -1.45
COL17A1Q9UMD9 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 GNG5P1-201ENST00000255500 204 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 RNU6-216P-201ENST00000363282 104 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 Y_RNA.387-201ENST00000383918 102 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 RNU6ATAC23P-201ENST00000408448 123 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AL953862.1-201ENST00000423016 168 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AL356583.2-201ENST00000426536 280 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 MTCO3P45-201ENST00000443036 613 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 HMGB1P29-201ENST00000505659 499 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AP003122.4-201ENST00000530980 758 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC022884.3-201ENST00000579571 248 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC103710.3-201ENST00000608157 948 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC026634.1-201ENST00000634369 198 ntBASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL17A1Q9UMD9 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC112198.2-201ENST00000426589 6996 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 PARD3-204ENST00000374768 799 ntTSL 3 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 SNORD116-23-201ENST00000384645 92 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 RNU6-908P-201ENST00000410160 94 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 RNA5SP118-201ENST00000410385 109 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 RPS12P24-201ENST00000412619 387 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 NANOGP6-201ENST00000429190 847 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 RPL12P46-201ENST00000436610 195 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 RN7SL807P-201ENST00000470923 297 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 HMGN1P11-201ENST00000508668 303 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 SNORA18.6-201ENST00000516792 115 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AP000889.2-201ENST00000532684 490 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 MIR3682-201ENST00000581338 84 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC078938.1-201ENST00000620993 318 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC125336.1-201ENST00000508893 2827 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 BDP1P-201ENST00000582658 1990 ntBASIC5.98□□□□□ -1.45
COL17A1Q9UMD9 AC126323.6-202ENST00000568092 3511 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms