Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ZNF807-201ENST00000328088 1707 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 Y_RNA.252-201ENST00000364556 101 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC117470.1-201ENST00000381974 330 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 RNU6-1032P-201ENST00000384100 107 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 SNORA16A-201ENST00000384342 137 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 RNY1P14-201ENST00000384426 108 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 RNU6-1105P-201ENST00000384774 107 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL030996.1-201ENST00000411430 235 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL592148.1-201ENST00000413568 445 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 MTCYBP10-201ENST00000424905 650 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC093151.1-201ENST00000427711 313 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL590383.1-201ENST00000428602 75 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 NOTCH2P1-201ENST00000443481 624 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL031274.1-201ENST00000450334 232 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL583843.1-201ENST00000456070 346 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AP000942.1-201ENST00000463969 747 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 RN7SL214P-201ENST00000487317 265 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC011005.2-201ENST00000487324 359 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC098976.1-201ENST00000513014 541 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 SCARNA20.4-201ENST00000516969 131 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC022404.1-201ENST00000555320 273 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC109446.1-201ENST00000566172 220 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC108738.1-201ENST00000603703 237 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL121917.1-203ENST00000605534 577 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 uc_338.7-201ENST00000621834 124 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AL359922.3-201ENST00000624779 1670 ntBASIC4.22□□□□□ -1.73
CCDC140Q96MF4 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
CCDC140Q96MF4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CCDC140Q96MF4 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.21□□□□□ -1.73
CCDC140Q96MF4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CCDC140Q96MF4 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.21□□□□□ -1.73
CCDC140Q96MF4 AC008079.2-201ENST00000623543 20396 ntBASIC4.21□□□□□ -1.73
CCDC140Q96MF4 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 MIR412-201ENST00000362142 91 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.48-201ENST00000362710 103 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.158-201ENST00000363651 101 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 RNU6-384P-201ENST00000364900 104 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.428-201ENST00000384078 102 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 RNU6-574P-201ENST00000384265 107 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.527-201ENST00000384573 102 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 RN7SKP126-201ENST00000411143 300 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 CHEK2P5-201ENST00000423877 246 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC006946.1-201ENST00000429106 328 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AL135752.1-201ENST00000479477 471 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC068781.1-201ENST00000488231 618 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 RNA5SP165-201ENST00000517142 115 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AF186190.1-201ENST00000517470 480 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 TVP23CP2-201ENST00000571473 623 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 MIR7853-201ENST00000584820 132 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 RMST_4.1-201ENST00000616886 107 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AL691477.1-201ENST00000624398 162 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC099654.2-201ENST00000433031 1980 ntBASIC4.21□□□□□ -1.74
CCDC140Q96MF4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 AC008568.2-201ENST00000623862 2313 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms