Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC006023.2-201ENST00000609916 167 ntBASIC2.48□□□□□ -2.01
COL18A1P39060 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
COL18A1P39060 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL18A1P39060 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL18A1P39060 RNA5SP160-201ENST00000364866 120 ntBASIC2.47□□□□□ -2.01
COL18A1P39060 RSL24D1P2-201ENST00000445584 366 ntBASIC2.47□□□□□ -2.01
COL18A1P39060 RPL21P104-201ENST00000464143 478 ntBASIC2.47□□□□□ -2.01
COL18A1P39060 AL049830.2-201ENST00000480072 201 ntBASIC2.47□□□□□ -2.01
COL18A1P39060 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.47□□□□□ -2.01
COL18A1P39060 AC025918.2-201ENST00000558683 763 ntBASIC2.47□□□□□ -2.01
COL18A1P39060 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.47□□□□□ -2.01
COL18A1P39060 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC2.47□□□□□ -2.01
COL18A1P39060 AC083865.1-201ENST00000636634 831 ntBASIC2.47□□□□□ -2.01
COL18A1P39060 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
COL18A1P39060 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL18A1P39060 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.46□□□□□ -2.01
COL18A1P39060 ZNF720P1-201ENST00000562403 1939 ntBASIC2.46□□□□□ -2.01
COL18A1P39060 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.46□□□□□ -2.02
COL18A1P39060 SNORA51.12-201ENST00000384448 134 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 MIR607-201ENST00000385241 96 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC092745.2-202ENST00000411880 369 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC241520.1-201ENST00000422654 1099 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC027124.2-201ENST00000428249 105 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 UBE2V1P5-201ENST00000440070 405 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 MTND5P8-201ENST00000449817 1083 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.46□□□□□ -2.02
COL18A1P39060 AC011352.3-201ENST00000505162 593 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC2.46□□□□□ -2.02
COL18A1P39060 AP003717.3-201ENST00000544832 1180 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.46□□□□□ -2.02
COL18A1P39060 AC024595.1-201ENST00000623088 387 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 U6.107-201ENST00000637108 79 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.46□□□□□ -2.02
COL18A1P39060 AC092447.7-201ENST00000422212 1621 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AL139276.1-201ENST00000311910 1001 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 SNORA51.2-201ENST00000364595 132 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 SNORD51.1-201ENST00000365405 77 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 SET-203ENST00000372688 801 ntTSL 2 BASIC2.46□□□□□ -2.02
COL18A1P39060 DYNLT3P1-201ENST00000378574 347 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 SNORA67.5-201ENST00000391036 107 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC019129.1-201ENST00000403786 261 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.46□□□□□ -2.02
COL18A1P39060 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.46□□□□□ -2.02
COL18A1P39060 MTND4P24-201ENST00000424002 397 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.46□□□□□ -2.02
COL18A1P39060 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.46□□□□□ -2.02
COL18A1P39060 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL18A1P39060 AL163540.1-201ENST00000485382 386 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 TRMT112P2-201ENST00000512910 132 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.46□□□□□ -2.02
COL18A1P39060 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.46□□□□□ -2.02
COL18A1P39060 MTATP6P25-201ENST00000574491 261 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC090616.5-202ENST00000582111 297 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 AC099778.2-201ENST00000610904 211 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.46□□□□□ -2.02
COL18A1P39060 AC090617.9-201ENST00000623751 147 ntBASIC2.46□□□□□ -2.02
COL18A1P39060 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.45□□□□□ -2.02
COL18A1P39060 SNORA7.2-201ENST00000364446 145 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL18A1P39060 MIR1250-201ENST00000408098 113 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 AC023128.2-201ENST00000420880 1223 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 MTND4LP14-201ENST00000429447 288 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 CKS1BP5-201ENST00000434172 273 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 HMGB1P31-201ENST00000437242 427 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 HMGB1P12-201ENST00000438594 598 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 AC114878.1-201ENST00000441166 358 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.45□□□□□ -2.02
COL18A1P39060 Z77249.1-201ENST00000444622 1175 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 CABYRP1-201ENST00000465493 1045 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.45□□□□□ -2.02
COL18A1P39060 LY96-202ENST00000518893 430 ntTSL 3 BASIC2.45□□□□□ -2.02
COL18A1P39060 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.45□□□□□ -2.02
COL18A1P39060 IGHV3-76-201ENST00000522465 295 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC2.45□□□□□ -2.02
COL18A1P39060 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC2.45□□□□□ -2.02
COL18A1P39060 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
COL18A1P39060 AL109809.4-201ENST00000603520 2185 ntBASIC2.45□□□□□ -2.02
COL18A1P39060 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL18A1P39060 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL18A1P39060 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
COL18A1P39060 AL513331.1-201ENST00000411908 397 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.44□□□□□ -2.02
COL18A1P39060 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC2.44□□□□□ -2.02
COL18A1P39060 AC244098.2-201ENST00000422068 99 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 OR51AB1P-201ENST00000429046 620 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.44□□□□□ -2.02
COL18A1P39060 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC2.44□□□□□ -2.02
COL18A1P39060 MTCO1P42-201ENST00000457379 726 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.44□□□□□ -2.02
COL18A1P39060 AC107393.1-201ENST00000512403 346 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 AC007536.1-201ENST00000533382 349 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.44□□□□□ -2.02
COL18A1P39060 AC010735.1-201ENST00000567305 1026 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.44□□□□□ -2.02
COL18A1P39060 AL009028.1-201ENST00000604895 802 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 AL355802.4-201ENST00000607635 548 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 MIR1264-201ENST00000616374 69 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL18A1P39060 SNORA51.11-201ENST00000384442 131 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 RNU6-883P-201ENST00000384597 107 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms