Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC005858.4-201ENST00000623191 700 ntBASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 AL672167.1-203ENST00000641299 2975 ntBASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC9Q9Y3X0 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AC107068.1-201ENST00000563286 4218 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 EXOC5P1-201ENST00000510543 1969 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 RNA5SP119-201ENST00000362715 117 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 RNU1-14P-201ENST00000362759 152 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 RNU6-282P-201ENST00000365357 103 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 RNU6-456P-201ENST00000384493 107 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AC104333.2-201ENST00000422630 192 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 DNAJC19P4-201ENST00000440115 345 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AC079781.2-201ENST00000446424 169 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 FGF7P3-201ENST00000454645 303 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 HMGN2P16-201ENST00000456802 261 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 RNA5SP230-201ENST00000517039 122 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 HMGB1P41-201ENST00000520234 440 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AP005205.1-201ENST00000563503 508 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AL354984.3-201ENST00000604803 325 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 AC096577.2-201ENST00000611455 153 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 MIR6891-201ENST00000618788 93 ntBASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC9Q9Y3X0 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RNU6-39P-201ENST00000384344 107 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RN7SKP140-201ENST00000411196 284 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RAB9AP3-201ENST00000412737 573 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AL031779.1-201ENST00000415663 330 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC068533.1-201ENST00000418542 415 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 OR2AS1P-201ENST00000427827 319 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AL590383.1-201ENST00000428602 75 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 MTCO2P11-201ENST00000431069 680 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 GAPDHP27-201ENST00000447427 1020 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RAB9AP1-201ENST00000449393 573 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RAD23BP3-201ENST00000454157 1152 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RNA5SP103-201ENST00000459503 118 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 RPL9P6-201ENST00000492764 598 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC099522.1-202ENST00000514718 367 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 CBX3P5-201ENST00000552017 521 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 SUB1P2-201ENST00000556401 297 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC098848.2-201ENST00000588023 330 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AL445363.3-201ENST00000623080 671 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC091905.1-201ENST00000624400 311 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC126323.6-202ENST00000568092 3511 ntBASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC9Q9Y3X0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 MARK2P15-201ENST00000432204 2186 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC016588.2-201ENST00000632484 3021 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 RNU5E-6P-201ENST00000365574 115 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 RNU4-55P-201ENST00000410731 137 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AF274854.1-201ENST00000413236 615 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AL512326.1-201ENST00000443050 721 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC132479.1-201ENST00000449160 144 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 RN7SL812P-201ENST00000493791 279 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 ENSA-210ENST00000503241 574 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 VWA8P1-201ENST00000510889 176 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms