Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4□□□□□ -1.77
VPS4AQ9UN37 AL158209.2-201ENST00000619266 216 ntBASIC4□□□□□ -1.77
VPS4AQ9UN37 AL359880.1-201ENST00000621879 266 ntBASIC4□□□□□ -1.77
VPS4AQ9UN37 AL732618.1-201ENST00000623251 301 ntBASIC4□□□□□ -1.77
VPS4AQ9UN37 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS4AQ9UN37 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS4AQ9UN37 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4□□□□□ -1.77
VPS4AQ9UN37 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC090337.1-201ENST00000579651 2074 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC024560.2-201ENST00000507981 1497 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AP001486.2-201ENST00000561652 5113 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 MIR208A-201ENST00000362287 71 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 Y_RNA.296-201ENST00000364930 108 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 Y_RNA.493-201ENST00000384422 102 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 MIR7-3-201ENST00000384898 110 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 RPS7P15-201ENST00000415804 584 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 MTCO2P11-201ENST00000431069 680 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 MRPS10P2-201ENST00000431226 381 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AL358934.1-201ENST00000432346 324 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 RPL23AP52-201ENST00000439311 478 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 MTND1P12-201ENST00000455231 147 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 C1DP4-201ENST00000455429 424 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AL139099.1-201ENST00000497398 403 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC105233.3-201ENST00000531125 744 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 MIR3146-201ENST00000580367 79 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC244505.7-201ENST00000599675 272 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AL606834.2-201ENST00000602954 668 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC121334.2-201ENST00000605387 271 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC011816.2-201ENST00000607089 556 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AL590099.1-201ENST00000615276 138 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC008013.2-202ENST00000637965 364 ntBASIC3.99□□□□□ -1.77
VPS4AQ9UN37 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS4AQ9UN37 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 XIAPP3-201ENST00000312918 795 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 RNU5E-1-201ENST00000362477 120 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 Y_RNA.248-201ENST00000364501 109 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 MTCO3P40-201ENST00000392516 676 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 CALM2P3-201ENST00000400429 449 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 SNORA11.2-201ENST00000408318 127 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 MTND1P23-201ENST00000416931 372 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL356095.1-201ENST00000417217 199 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL157831.1-201ENST00000426134 473 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 ARPC3P1-201ENST00000437218 533 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 RPS29P7-201ENST00000439662 171 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 USP9YP15-201ENST00000442391 422 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC013267.1-201ENST00000458227 267 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 MTCO2P29-201ENST00000465212 189 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AP000926.1-201ENST00000479573 241 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 VN1R105P-201ENST00000486595 910 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC068305.1-201ENST00000497406 726 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 RPS27AP13-201ENST00000498403 237 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 RNA5SP73-201ENST00000516744 108 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms