Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AF117829.1-206ENST00000621883 3802 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 ZNF807-201ENST00000328088 1707 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 RPL21P132-201ENST00000331267 462 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 RNU6-462P-201ENST00000362659 105 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AP002088.1-201ENST00000382740 395 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 U3.19-201ENST00000390893 196 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AL590084.2-201ENST00000401481 382 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AL356131.1-201ENST00000405826 414 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 RN7SKP285-201ENST00000410137 318 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC092447.3-201ENST00000426027 686 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AL593851.1-201ENST00000426171 157 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 RPL7P34-201ENST00000433316 712 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 MTCO1P27-201ENST00000448269 226 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 OR6C5P-201ENST00000452388 923 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 MLLT10P2-201ENST00000506434 249 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 KLHL2P1-201ENST00000508691 521 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 LTV1P1-201ENST00000510683 1237 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 RN7SKP60-201ENST00000516985 239 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC093331.1-201ENST00000521474 169 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 SNRPGP16-201ENST00000533275 226 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 MIR5680-201ENST00000577577 84 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 YPEL5P2-201ENST00000605553 359 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AL157817.1-201ENST00000614264 790 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AL356585.4-201ENST00000623078 1229 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC120349.3-201ENST00000624377 529 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 AC009039.2-201ENST00000624524 529 ntBASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CPSF3Q9UKF6 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC021755.1-201ENST00000559747 1447 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 RNA5SP387-201ENST00000364226 106 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 Y_RNA.234-201ENST00000364409 97 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AL035407.1-201ENST00000429211 571 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 SNRPEP7-201ENST00000438350 220 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 RABEPKP1-201ENST00000440529 1026 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 MTND5P2-201ENST00000442927 1142 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 ST13P14-201ENST00000474095 734 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC017015.1-201ENST00000477387 286 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 FAM172BP-201ENST00000487497 1089 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 PHBP14-201ENST00000512887 367 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 NDUFB9P3-201ENST00000521269 501 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 MTATP6P15-201ENST00000527233 835 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC002400.1-201ENST00000569310 726 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 ISCA1P3-201ENST00000577104 373 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 MIR2682-201ENST00000580305 110 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC008751.2-201ENST00000597885 980 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC106791.2-201ENST00000604680 391 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AC095031.1-201ENST00000623685 672 ntBASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.53□□□□□ -1.84
CPSF3Q9UKF6 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC073346.2-201ENST00000624724 2058 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 RNU6-1155P-201ENST00000363554 107 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 VPS26BP1-201ENST00000417155 755 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC083875.1-201ENST00000419509 405 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC233728.2-201ENST00000425348 757 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AL353705.1-201ENST00000433468 480 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 SNRPEP4-201ENST00000435815 279 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 HMGB3P11-201ENST00000440127 604 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 RPL23AP31-201ENST00000456160 467 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC010468.1-201ENST00000461022 817 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 237.1 ms