Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 SNORA31.15-201ENST00000516771 132 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 KATNBL1P1-201ENST00000605192 748 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AC092954.1-201ENST00000609121 445 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AC008121.3-201ENST00000618726 433 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 RNU6-1105P-201ENST00000384774 107 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 MIR3670-2-201ENST00000582974 65 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 MIR3670-1-201ENST00000584160 65 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 MIR3670-3-201ENST00000584855 65 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AC008687.2-201ENST00000597865 520 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 MIR3670-4-201ENST00000612260 65 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
VPS13AQ96RL7 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.17
VPS13AQ96RL7 RNA5SP62-201ENST00000363457 110 ntBASIC1.53□□□□□ -2.17
VPS13AQ96RL7 CD3D-202ENST00000392884 476 ntTSL 2 BASIC1.53□□□□□ -2.17
VPS13AQ96RL7 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.53□□□□□ -2.17
VPS13AQ96RL7 AC092989.1-201ENST00000481235 277 ntBASIC1.53□□□□□ -2.17
VPS13AQ96RL7 AC087854.1-201ENST00000519706 414 ntBASIC1.53□□□□□ -2.17
VPS13AQ96RL7 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC1.53□□□□□ -2.17
VPS13AQ96RL7 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.53□□□□□ -2.17
VPS13AQ96RL7 MIR502-201ENST00000606349 86 ntBASIC1.53□□□□□ -2.17
VPS13AQ96RL7 AC025016.1-201ENST00000616746 682 ntBASIC1.53□□□□□ -2.17
VPS13AQ96RL7 RNA5SP27-201ENST00000363839 119 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 HIGD1AP11-201ENST00000438361 280 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 OR7L1P-201ENST00000456181 380 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.52□□□□□ -2.17
VPS13AQ96RL7 ATG10-AS1-201ENST00000504846 648 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 AC022790.1-201ENST00000522872 204 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS13AQ96RL7 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC1.52□□□□□ -2.17
VPS13AQ96RL7 AC138649.5-201ENST00000637456 137 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
VPS13AQ96RL7 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
VPS13AQ96RL7 SNORD114-27-201ENST00000363766 70 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 MIR520E-201ENST00000384867 87 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 RNA5SP181-201ENST00000410246 98 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 TRIAP1P1-201ENST00000427062 225 ntBASIC1.52□□□□□ -2.17
VPS13AQ96RL7 RNU1-139P-201ENST00000391307 165 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 RPL23AP29-201ENST00000397284 453 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AL021397.1-201ENST00000451806 248 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 RNA5SP138-201ENST00000365098 114 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AL513185.2-201ENST00000425543 193 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AC009961.3-201ENST00000449832 765 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AC009474.2-201ENST00000451383 136 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 RPS29P29-201ENST00000456396 171 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AP000907.2-201ENST00000530827 353 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AP002345.1-201ENST00000456493 928 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AC069528.1-202ENST00000482888 637 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 RPS3AP22-201ENST00000488297 769 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AC024614.2-201ENST00000577584 372 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 MIR6788-201ENST00000618842 66 ntBASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.51□□□□□ -2.17
VPS13AQ96RL7 NUP58P1-201ENST00000502546 1738 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 MIR373-201ENST00000362273 69 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 RAD23BP2-201ENST00000416003 1207 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 FNDC3CP-201ENST00000420795 1155 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AC023128.2-201ENST00000420880 1223 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 HMGB1P12-201ENST00000438594 598 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 SULT1C2P1-202ENST00000562418 459 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AC006026.1-201ENST00000444025 1803 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 DDX43P2-201ENST00000604753 1354 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 TBCAP3-201ENST00000512475 312 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS13AQ96RL7 AC007687.1-201ENST00000602704 304 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 5S_rRNA.12-201ENST00000617631 107 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 STMN1P1-201ENST00000617809 440 ntBASIC1.5□□□□□ -2.17
VPS13AQ96RL7 RN7SKP101-201ENST00000411376 320 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms