Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC004825.2-201ENST00000616634 455 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC072046.2-201ENST00000618366 268 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AL445264.1-201ENST00000621719 171 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC138649.3-201ENST00000622154 254 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC039056.2-201ENST00000622261 511 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AP004289.2-201ENST00000444413 1457 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC004520.1-201ENST00000608362 1413 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC016769.3-201ENST00000396562 315 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 C1DP2-201ENST00000418167 426 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AL445669.1-201ENST00000426743 755 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 NDUFB1P1-201ENST00000435191 180 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC127537.2-201ENST00000439258 465 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 RABEPKP1-201ENST00000440529 1026 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 MTND6P13-201ENST00000443510 523 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC006480.1-201ENST00000449887 378 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 BTF3P5-201ENST00000457252 467 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 RPS3AP17-201ENST00000472594 777 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC078918.1-201ENST00000498515 228 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 RN7SKP83-201ENST00000516512 178 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 SNORA18.6-201ENST00000516792 115 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 RNU6-1003P-201ENST00000517099 105 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 RNU1-45P-201ENST00000517191 141 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AP003467.2-201ENST00000520175 319 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC137800.2-201ENST00000574375 120 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 MIR3913-1-201ENST00000577744 102 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC093227.2-201ENST00000589357 285 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 TPMTP1-201ENST00000592307 737 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AL161729.4-201ENST00000604650 476 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AL713922.2-201ENST00000619384 716 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 CYP3A51P-201ENST00000633513 256 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AC099654.13-201ENST00000639774 207 ntBASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.47□□□□□ -1.69
VPS53Q5VIR6 AL157700.1-201ENST00000561973 1432 ntBASIC4.46□□□□□ -1.69
VPS53Q5VIR6 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.46□□□□□ -1.69
VPS53Q5VIR6 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AL031679.1-201ENST00000400616 525 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AL445189.1-201ENST00000405722 338 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC007742.1-201ENST00000425789 329 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC006548.1-201ENST00000427470 102 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AL596276.1-201ENST00000434465 418 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 ELOCP26-201ENST00000436067 329 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 Z82190.1-201ENST00000454534 490 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC104563.1-201ENST00000476147 376 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC034159.1-201ENST00000513885 583 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC135001.1-201ENST00000544546 283 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC124947.2-202ENST00000552735 133 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 RPL21P5-201ENST00000554662 472 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC092325.1-201ENST00000566449 554 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 MTCO3P24-201ENST00000572729 782 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 MIR5187-201ENST00000583479 76 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 SNRPGP15-201ENST00000600149 222 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AL359999.1-201ENST00000604513 294 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AP000860.1-201ENST00000605250 559 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AF250324.2-201ENST00000608299 610 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 CR381653.2-201ENST00000624041 768 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 CR381572.1-201ENST00000625098 102 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC119674.1-207ENST00000641355 633 ntBASIC4.46□□□□□ -1.7
VPS53Q5VIR6 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms