Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.78□□□□□ -1.8
BDNFP23560 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
BDNFP23560 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
BDNFP23560 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.78□□□□□ -1.81
BDNFP23560 ZNF519P1-201ENST00000449011 1626 ntBASIC3.77□□□□□ -1.81
BDNFP23560 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
BDNFP23560 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
BDNFP23560 MTCO1P12-201ENST00000414273 1543 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
BDNFP23560 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
BDNFP23560 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.77□□□□□ -1.81
BDNFP23560 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.77□□□□□ -1.81
BDNFP23560 Y_RNA.548-201ENST00000384656 105 ntBASIC3.77□□□□□ -1.81
BDNFP23560 MIR325-201ENST00000385260 98 ntBASIC3.77□□□□□ -1.81
BDNFP23560 ANAPC10P1-201ENST00000395991 556 ntBASIC3.77□□□□□ -1.81
BDNFP23560 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
BDNFP23560 MIR1289-1-201ENST00000408836 144 ntBASIC3.77□□□□□ -1.81
BDNFP23560 RPL17P12-201ENST00000413391 526 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AL035407.1-201ENST00000429211 571 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AL353705.1-201ENST00000433468 480 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.77□□□□□ -1.81
BDNFP23560 MTCO2P20-201ENST00000437339 673 ntBASIC3.77□□□□□ -1.81
BDNFP23560 LSM1P1-201ENST00000438629 273 ntBASIC3.77□□□□□ -1.81
BDNFP23560 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.77□□□□□ -1.81
BDNFP23560 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.77□□□□□ -1.81
BDNFP23560 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.77□□□□□ -1.81
BDNFP23560 ANKRD26P4-201ENST00000455755 950 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AP1S2P1-201ENST00000457344 379 ntBASIC3.77□□□□□ -1.81
BDNFP23560 RNU7-23P-201ENST00000459465 62 ntBASIC3.77□□□□□ -1.81
BDNFP23560 RN7SL93P-201ENST00000463035 293 ntBASIC3.77□□□□□ -1.81
BDNFP23560 HMGB1P36-201ENST00000487709 576 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.77□□□□□ -1.81
BDNFP23560 AC104090.1-201ENST00000506341 1171 ntBASIC3.77□□□□□ -1.81
BDNFP23560 TTC39CP1-201ENST00000512513 755 ntBASIC3.77□□□□□ -1.81
BDNFP23560 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.77□□□□□ -1.81
BDNFP23560 KLKP1-201ENST00000595979 403 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AL139344.1-201ENST00000605228 195 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AC004908.2-201ENST00000609090 574 ntBASIC3.77□□□□□ -1.81
BDNFP23560 SDR42E1P2-201ENST00000614861 481 ntBASIC3.77□□□□□ -1.81
BDNFP23560 AC010133.1-201ENST00000615809 842 ntBASIC3.77□□□□□ -1.81
BDNFP23560 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
BDNFP23560 AP001002.2-201ENST00000625137 386 ntBASIC3.77□□□□□ -1.81
BDNFP23560 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
BDNFP23560 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
BDNFP23560 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.76□□□□□ -1.81
BDNFP23560 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
BDNFP23560 SNORA63.1-201ENST00000362493 131 ntBASIC3.76□□□□□ -1.81
BDNFP23560 MIR490-201ENST00000384865 128 ntBASIC3.76□□□□□ -1.81
BDNFP23560 MIR183-201ENST00000384958 110 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AL109755.1-201ENST00000401791 649 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AL513331.1-201ENST00000411908 397 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AC092641.1-201ENST00000440229 772 ntBASIC3.76□□□□□ -1.81
BDNFP23560 CR769776.1-201ENST00000441254 787 ntBASIC3.76□□□□□ -1.81
BDNFP23560 PIGFP3-201ENST00000441918 722 ntBASIC3.76□□□□□ -1.81
BDNFP23560 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.76□□□□□ -1.81
BDNFP23560 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.76□□□□□ -1.81
BDNFP23560 RPL23AP14-201ENST00000468281 468 ntBASIC3.76□□□□□ -1.81
BDNFP23560 RPL7P49-201ENST00000471402 708 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
BDNFP23560 GTF2IP9-201ENST00000502460 301 ntBASIC3.76□□□□□ -1.81
BDNFP23560 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.76□□□□□ -1.81
BDNFP23560 POU5F1P7-201ENST00000508759 541 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.76□□□□□ -1.81
BDNFP23560 RN7SKP83-201ENST00000516512 178 ntBASIC3.76□□□□□ -1.81
BDNFP23560 RN7SKP282-201ENST00000516824 299 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AC007458.1-201ENST00000542812 373 ntBASIC3.76□□□□□ -1.81
BDNFP23560 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
BDNFP23560 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.76□□□□□ -1.81
BDNFP23560 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.76□□□□□ -1.81
BDNFP23560 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.76□□□□□ -1.81
BDNFP23560 AC060771.1-201ENST00000582031 164 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AF038458.1-201ENST00000588406 262 ntBASIC3.76□□□□□ -1.81
BDNFP23560 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.76□□□□□ -1.81
BDNFP23560 AC091057.2-201ENST00000602594 792 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AC004832.5-201ENST00000608677 401 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AC018816.2-201ENST00000621460 353 ntBASIC3.76□□□□□ -1.81
BDNFP23560 AP000676.3-201ENST00000623299 569 ntBASIC3.76□□□□□ -1.81
BDNFP23560 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.76□□□□□ -1.81
BDNFP23560 U6.105-201ENST00000637379 88 ntBASIC3.76□□□□□ -1.81
BDNFP23560 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
BDNFP23560 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.76□□□□□ -1.81
BDNFP23560 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.76□□□□□ -1.81
BDNFP23560 PABPC1P9-201ENST00000426076 1612 ntBASIC3.76□□□□□ -1.81
BDNFP23560 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
BDNFP23560 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
BDNFP23560 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
BDNFP23560 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.75□□□□□ -1.81
BDNFP23560 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
BDNFP23560 RNU6-1242P-201ENST00000391052 103 ntBASIC3.75□□□□□ -1.81
BDNFP23560 MTCO2P21-201ENST00000419780 677 ntBASIC3.75□□□□□ -1.81
BDNFP23560 AL645937.1-202ENST00000421799 937 ntBASIC3.75□□□□□ -1.81
BDNFP23560 BX890604.2-201ENST00000427883 474 ntBASIC3.75□□□□□ -1.81
BDNFP23560 SAR1AP4-201ENST00000429225 591 ntBASIC3.75□□□□□ -1.81
BDNFP23560 ATP5JP1-201ENST00000431631 322 ntBASIC3.75□□□□□ -1.81
BDNFP23560 RPL23AP58-201ENST00000440453 469 ntBASIC3.75□□□□□ -1.81
BDNFP23560 PRDX3P3-201ENST00000447765 522 ntBASIC3.75□□□□□ -1.81
BDNFP23560 AP000542.1-201ENST00000448473 371 ntBASIC3.75□□□□□ -1.81
BDNFP23560 CYCSP35-201ENST00000451978 304 ntBASIC3.75□□□□□ -1.81
BDNFP23560 PRSS3P4-201ENST00000453323 162 ntBASIC3.75□□□□□ -1.81
BDNFP23560 AC091153.1-201ENST00000466297 402 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms