Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SRP72P2-201ENST00000344851 1979 ntBASIC3.36□□□□□ -1.87
SIX3O95343 AP000526.1-201ENST00000603308 1388 ntBASIC3.36□□□□□ -1.87
SIX3O95343 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SIX3O95343 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.36□□□□□ -1.87
SIX3O95343 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 AC012321.1-201ENST00000561622 1588 ntBASIC3.35□□□□□ -1.87
SIX3O95343 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 RNU6-931P-201ENST00000363850 107 ntBASIC3.35□□□□□ -1.87
SIX3O95343 RNU6-76P-201ENST00000384060 104 ntBASIC3.35□□□□□ -1.87
SIX3O95343 RNU6-301P-201ENST00000384277 107 ntBASIC3.35□□□□□ -1.87
SIX3O95343 U3.20-201ENST00000390909 217 ntBASIC3.35□□□□□ -1.87
SIX3O95343 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 RPL23AP82-202ENST00000427528 469 ntBASIC3.35□□□□□ -1.87
SIX3O95343 TXNL1P1-201ENST00000429528 554 ntBASIC3.35□□□□□ -1.87
SIX3O95343 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.35□□□□□ -1.87
SIX3O95343 AC092573.2-201ENST00000434546 243 ntBASIC3.35□□□□□ -1.87
SIX3O95343 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 HIGD1AP11-201ENST00000438361 280 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC108734.1-201ENST00000439549 399 ntBASIC3.35□□□□□ -1.87
SIX3O95343 RPL26P6-201ENST00000440913 438 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.35□□□□□ -1.87
SIX3O95343 AL591503.2-201ENST00000442314 1005 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.35□□□□□ -1.87
SIX3O95343 AC097262.1-201ENST00000452559 548 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AL109741.2-201ENST00000455561 343 ntBASIC3.35□□□□□ -1.87
SIX3O95343 ARPC3P2-201ENST00000457786 533 ntBASIC3.35□□□□□ -1.87
SIX3O95343 CENPBD1P1-201ENST00000464061 469 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC021205.2-201ENST00000480069 347 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC147055.4-201ENST00000504399 745 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC093809.1-201ENST00000509155 340 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC104619.4-201ENST00000510773 249 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AP003461.1-201ENST00000528866 78 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.35□□□□□ -1.87
SIX3O95343 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.35□□□□□ -1.87
SIX3O95343 UBE2NP1-201ENST00000545592 458 ntBASIC3.35□□□□□ -1.87
SIX3O95343 SETP2-201ENST00000553886 926 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC009097.3-201ENST00000563557 1018 ntBASIC3.35□□□□□ -1.87
SIX3O95343 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.35□□□□□ -1.87
SIX3O95343 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.35□□□□□ -1.87
SIX3O95343 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.35□□□□□ -1.87
SIX3O95343 AP000254.1-201ENST00000609934 520 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AL139418.1-201ENST00000613613 177 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC007490.1-201ENST00000624321 703 ntBASIC3.35□□□□□ -1.87
SIX3O95343 PCMTD1P7-201ENST00000634506 357 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
SIX3O95343 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 AC058791.1-201ENST00000608412 3198 ntBASIC3.35□□□□□ -1.87
SIX3O95343 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SIX3O95343 ZNF285B-201ENST00000561698 1767 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AC011460.1-201ENST00000636268 1834 ntBASIC3.35□□□□□ -1.87
SIX3O95343 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SIX3O95343 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.35□□□□□ -1.87
SIX3O95343 DDX10P1-201ENST00000448545 1933 ntBASIC3.34□□□□□ -1.87
SIX3O95343 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SIX3O95343 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SIX3O95343 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
SIX3O95343 RNA5SP197-201ENST00000363357 119 ntBASIC3.34□□□□□ -1.87
SIX3O95343 RNU4-28P-201ENST00000364739 141 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SIX3O95343 RNU6-432P-201ENST00000384196 109 ntBASIC3.34□□□□□ -1.87
SIX3O95343 Y_RNA.510-201ENST00000384511 114 ntBASIC3.34□□□□□ -1.87
SIX3O95343 SNORA1.3-201ENST00000384676 136 ntBASIC3.34□□□□□ -1.87
SIX3O95343 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SIX3O95343 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 AL356968.1-201ENST00000416622 474 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 USP9YP36-201ENST00000424581 829 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AC008850.1-201ENST00000427546 362 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.34□□□□□ -1.87
SIX3O95343 AC073387.1-201ENST00000453261 709 ntBASIC3.34□□□□□ -1.87
SIX3O95343 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX3O95343 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.34□□□□□ -1.87
SIX3O95343 AC104308.1-201ENST00000454621 333 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AC109464.2-201ENST00000510242 943 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 RN7SKP18-201ENST00000516005 275 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AC107934.2-201ENST00000518653 310 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.34□□□□□ -1.87
SIX3O95343 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.34□□□□□ -1.87
SIX3O95343 AC010653.1-201ENST00000571108 881 ntBASIC3.34□□□□□ -1.87
SIX3O95343 RPL23AP84-201ENST00000571193 464 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX3O95343 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX3O95343 AC110801.1-201ENST00000623590 212 ntBASIC3.34□□□□□ -1.87
SIX3O95343 U6.105-201ENST00000637379 88 ntBASIC3.34□□□□□ -1.87
SIX3O95343 AC244258.1-201ENST00000637553 1071 ntBASIC3.34□□□□□ -1.87
SIX3O95343 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX3O95343 FAM35BP-202ENST00000497389 3337 ntBASIC3.34□□□□□ -1.87
SIX3O95343 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SIX3O95343 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
SIX3O95343 ZNF833P-201ENST00000424938 1494 ntBASIC3.34□□□□□ -1.88
SIX3O95343 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SIX3O95343 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms