Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RPS3AP26-201ENST00000398259 784 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 RNU6-1077P-201ENST00000410506 102 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 ATP5A1P2-201ENST00000412323 255 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 HSPD1P21-201ENST00000436541 245 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 OR6K5P-201ENST00000447050 945 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 ANKRD26P4-201ENST00000455755 950 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 U8.18-201ENST00000459285 133 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 RPS23P3-201ENST00000470993 430 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC023598.1-201ENST00000472521 361 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC017015.1-201ENST00000477387 286 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 VN1R104P-201ENST00000505115 1009 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 POU5F1P7-201ENST00000508759 541 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC022483.1-201ENST00000514020 567 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 RN7SKP18-201ENST00000516005 275 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 RN7SKP265-201ENST00000516448 223 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MTND1P24-201ENST00000552175 861 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC012468.1-201ENST00000604888 430 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC090186.1-201ENST00000605991 572 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 RNU6-88P-201ENST00000606801 100 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC096577.2-201ENST00000611455 153 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC011330.2-201ENST00000621680 635 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC009812.4-201ENST00000569134 1805 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MTCO1P12-201ENST00000414273 1543 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MTND5P7-201ENST00000413558 1798 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 MIR218-2-201ENST00000385006 110 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 PIGPP2-201ENST00000411569 458 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 RPS3AP25-201ENST00000411660 793 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC007899.1-201ENST00000412776 775 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC083875.1-201ENST00000419509 405 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 UBE2D3P2-201ENST00000424409 445 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC233728.2-201ENST00000425348 757 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 PAXBP1P1-201ENST00000449315 447 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 CYCSP35-201ENST00000451978 304 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC234775.1-201ENST00000454247 670 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 RPS26P21-201ENST00000475397 348 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 CBX3P3-201ENST00000508108 532 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 RNU6-528P-201ENST00000516926 100 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC009097.3-201ENST00000563557 1018 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 VN1R92P-201ENST00000598511 928 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC006557.5-201ENST00000603126 811 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC106900.2-201ENST00000604994 317 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC022149.2-201ENST00000621061 203 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC091953.5-201ENST00000622919 233 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 MTND5P1-201ENST00000445440 1375 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.12□□□□□ -1.91
DDX28Q9NUL7 AC073346.2-201ENST00000624724 2058 ntBASIC3.12□□□□□ -1.91
DDX28Q9NUL7 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC008264.2-201ENST00000610193 3731 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 MTCO1P9-201ENST00000505577 1534 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 SNORD113-6-201ENST00000363345 75 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms