Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SNORD116.1-201ENST00000365628 92 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 MIR7-3-201ENST00000384898 110 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AL450338.1-201ENST00000407987 512 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC007435.1-201ENST00000421086 415 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 NANOGP5-201ENST00000424456 877 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AL159987.2-201ENST00000432754 307 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC009969.1-201ENST00000438726 172 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 RPL26P6-201ENST00000440913 438 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 UQCRHP3-201ENST00000451503 251 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC005410.1-202ENST00000460347 485 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 RN7SL75P-201ENST00000461926 281 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 RPL7P23-201ENST00000493874 747 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC134050.1-201ENST00000495088 933 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS39Q96JC1 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC087373.1-201ENST00000524920 491 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 ACTR3BP3-201ENST00000565577 979 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 MIR4444-1-201ENST00000581696 74 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 ZNF415P1-201ENST00000582279 1166 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 MAGOH2P-202ENST00000584384 429 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 MIR4444-2-201ENST00000584390 74 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC004853.1-201ENST00000604902 698 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC027449.1-201ENST00000608890 407 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 AC110079.1-202ENST00000635213 138 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 U6.105-201ENST00000637379 88 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 MIR1322-201ENST00000638013 71 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 OR8B1P-202ENST00000641132 1178 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS39Q96JC1 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS39Q96JC1 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 SNORD21-201ENST00000383953 95 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 MIR670-201ENST00000390142 98 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 NDUFB4P5-201ENST00000415445 361 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 CCDC58P2-201ENST00000417131 366 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 RPS3AP37-201ENST00000419176 745 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC092648.1-201ENST00000425870 423 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 OR2B8P-201ENST00000432841 938 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC090774.1-201ENST00000435925 246 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AL031313.1-201ENST00000448435 256 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 RPL21P131-201ENST00000497298 483 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 TPT1P8-201ENST00000510120 555 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 SCARNA1-201ENST00000517138 166 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 AADACP1-206ENST00000561502 1193 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 RN7SL339P-201ENST00000580597 296 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 MIR4506-201ENST00000584693 77 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 CKS1BP3-201ENST00000600888 237 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AL390838.2-201ENST00000602394 274 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC091057.2-201ENST00000602594 792 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC106052.1-201ENST00000608029 497 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC024257.5-201ENST00000612739 531 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC100793.4-201ENST00000613683 429 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC023158.2-201ENST00000614876 543 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC002064.3-201ENST00000623448 346 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC138915.1-201ENST00000565427 1685 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 AC107982.1-201ENST00000507171 1300 ntBASIC3.13□□□□□ -1.91
VPS39Q96JC1 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS39Q96JC1 AP000526.1-201ENST00000603308 1388 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC012321.1-201ENST00000561622 1588 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC010680.1-201ENST00000590024 3590 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS39Q96JC1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 RNU6-198P-201ENST00000384258 104 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 MIR183-201ENST00000384958 110 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AL357075.1-201ENST00000404107 726 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms