Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL670379.1-201ENST00000604752 252 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.2-201ENST00000604983 252 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.5-201ENST00000605253 252 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.4-201ENST00000605279 254 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.12-201ENST00000605291 253 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.8-201ENST00000605353 252 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.9-201ENST00000605428 253 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.7-201ENST00000605823 252 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC100814.1-201ENST00000606963 623 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL021368.1-201ENST00000607490 540 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC005021.1-201ENST00000608730 355 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC131902.3-201ENST00000611767 581 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL109809.4-201ENST00000603520 2185 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.31□□□□□ -2.04
COL5A3P25940 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
COL5A3P25940 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
COL5A3P25940 MIR1323-201ENST00000408090 73 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 RNA5SP338-201ENST00000410495 85 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC109583.1-201ENST00000432156 268 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.31□□□□□ -2.04
COL5A3P25940 AC093392.2-201ENST00000450682 337 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 C1DP3-201ENST00000455013 423 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 RNU6-717P-201ENST00000459076 104 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
COL5A3P25940 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.31□□□□□ -2.04
COL5A3P25940 AC005840.1-201ENST00000498412 377 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC107393.1-201ENST00000512403 346 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.31□□□□□ -2.04
COL5A3P25940 AC022790.1-201ENST00000522872 204 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.31□□□□□ -2.04
COL5A3P25940 COX6CP5-201ENST00000527162 228 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 CBX3P4-201ENST00000538909 354 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.31□□□□□ -2.04
COL5A3P25940 AC068714.1-201ENST00000559623 800 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 RPS3AP23-202ENST00000574601 686 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC103810.1-201ENST00000579873 453 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC090425.2-201ENST00000608818 501 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL353748.2-201ENST00000622148 471 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.31□□□□□ -2.04
COL5A3P25940 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL5A3P25940 AC103988.1-201ENST00000566382 2177 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL589826.1-201ENST00000340697 249 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 RPL21P75-201ENST00000396599 483 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 RPL21P1-201ENST00000399532 476 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 RPL21P28-201ENST00000401418 483 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 AL592114.1-201ENST00000403842 483 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A3P25940 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.3□□□□□ -2.04
COL5A3P25940 AL392003.1-201ENST00000434394 243 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 BTBD7P2-201ENST00000441962 620 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.3□□□□□ -2.04
COL5A3P25940 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC2.3□□□□□ -2.04
COL5A3P25940 RPL21P16-201ENST00000495531 483 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC2.3□□□□□ -2.04
COL5A3P25940 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.3□□□□□ -2.04
COL5A3P25940 SMARCE1P4-201ENST00000523647 241 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 AP003385.6-201ENST00000531603 374 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 RPS3AP4-201ENST00000555161 764 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 AC002984.1-201ENST00000591692 448 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 AL354696.1-201ENST00000614652 497 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 AC009032.1-201ENST00000617574 431 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A3P25940 AC011978.2-201ENST00000569835 2054 ntBASIC2.3□□□□□ -2.04
COL5A3P25940 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A3P25940 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.3□□□□□ -2.04
COL5A3P25940 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A3P25940 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.29□□□□□ -2.04
COL5A3P25940 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL5A3P25940 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.29□□□□□ -2.04
COL5A3P25940 FNDC3CP-201ENST00000420795 1155 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 AC027124.2-201ENST00000428249 105 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 AC104332.2-201ENST00000429959 156 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.29□□□□□ -2.04
COL5A3P25940 AL157827.1-201ENST00000447622 132 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.29□□□□□ -2.04
COL5A3P25940 AC012181.1-201ENST00000479895 423 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 OR4P1P-201ENST00000530808 1136 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.29□□□□□ -2.04
COL5A3P25940 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC2.29□□□□□ -2.04
COL5A3P25940 AC090751.1-201ENST00000566966 267 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 AL133393.1-201ENST00000603277 287 ntBASIC2.29□□□□□ -2.04
COL5A3P25940 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.29□□□□□ -2.04
COL5A3P25940 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL5A3P25940 UBE2L2-201ENST00000254302 429 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 MIR337-201ENST00000362281 93 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.28□□□□□ -2.04
COL5A3P25940 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.28□□□□□ -2.04
COL5A3P25940 TRIM60P13-201ENST00000432350 1283 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC2.28□□□□□ -2.04
COL5A3P25940 RPS7P5-201ENST00000441482 581 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 XKRY2-201ENST00000442362 1093 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.28□□□□□ -2.04
COL5A3P25940 RPL23AP20-201ENST00000447965 421 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 CDC42P1-201ENST00000456658 548 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 RNU7-95P-201ENST00000459222 64 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 RNU7-27P-201ENST00000459281 62 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 RPS29P12-201ENST00000460178 152 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 RPL5P13-201ENST00000462840 709 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 AC109486.1-201ENST00000486833 374 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms