Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RNA5SP338-201ENST00000410495 85 ntBASIC1.72□□□□□ -2.13
VCANP13611 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
VCANP13611 AC112191.3-201ENST00000604371 277 ntBASIC1.72□□□□□ -2.13
VCANP13611 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.13
VCANP13611 MFF-206ENST00000392059 1710 ntTSL 5 BASIC1.71□□□□□ -2.13
VCANP13611 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
VCANP13611 RNA5SP296-201ENST00000410523 111 ntBASIC1.71□□□□□ -2.14
VCANP13611 VN1R74P-201ENST00000613259 503 ntBASIC1.71□□□□□ -2.14
VCANP13611 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
VCANP13611 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.71□□□□□ -2.14
VCANP13611 RNA5SP27-201ENST00000363839 119 ntBASIC1.71□□□□□ -2.14
VCANP13611 Y_RNA.258-201ENST00000364613 105 ntBASIC1.71□□□□□ -2.14
VCANP13611 RNU6-174P-201ENST00000410406 106 ntBASIC1.71□□□□□ -2.14
VCANP13611 AC008127.2-201ENST00000549925 1075 ntBASIC1.71□□□□□ -2.14
VCANP13611 MIR4644-201ENST00000579929 84 ntBASIC1.71□□□□□ -2.14
VCANP13611 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.71□□□□□ -2.14
VCANP13611 AC010297.1-201ENST00000623948 149 ntBASIC1.71□□□□□ -2.14
VCANP13611 RNU6-492P-201ENST00000363035 104 ntBASIC1.7□□□□□ -2.14
VCANP13611 RNA5SP344-201ENST00000411081 104 ntBASIC1.7□□□□□ -2.14
VCANP13611 AP000705.1-201ENST00000454567 350 ntBASIC1.7□□□□□ -2.14
VCANP13611 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.7□□□□□ -2.14
VCANP13611 ASNSP4-201ENST00000511103 447 ntBASIC1.7□□□□□ -2.14
VCANP13611 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.7□□□□□ -2.14
VCANP13611 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC1.7□□□□□ -2.14
VCANP13611 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.7□□□□□ -2.14
VCANP13611 RPL21P2-201ENST00000440049 481 ntBASIC1.7□□□□□ -2.14
VCANP13611 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.7□□□□□ -2.14
VCANP13611 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.7□□□□□ -2.14
VCANP13611 AC008133.2-201ENST00000624540 351 ntBASIC1.7□□□□□ -2.14
VCANP13611 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC1.7□□□□□ -2.14
VCANP13611 AC025033.1-201ENST00000463883 194 ntBASIC1.7□□□□□ -2.14
VCANP13611 HMGB3P15-201ENST00000507326 574 ntBASIC1.7□□□□□ -2.14
VCANP13611 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.7□□□□□ -2.14
VCANP13611 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.7□□□□□ -2.14
VCANP13611 STMN1P1-201ENST00000617809 440 ntBASIC1.7□□□□□ -2.14
VCANP13611 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
VCANP13611 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
VCANP13611 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
VCANP13611 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
VCANP13611 AP002345.1-201ENST00000456493 928 ntBASIC1.69□□□□□ -2.14
VCANP13611 RPL7P5-201ENST00000471472 736 ntBASIC1.69□□□□□ -2.14
VCANP13611 RPS3AP22-201ENST00000488297 769 ntBASIC1.69□□□□□ -2.14
VCANP13611 AC008885.2-201ENST00000509506 930 ntBASIC1.69□□□□□ -2.14
VCANP13611 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.69□□□□□ -2.14
VCANP13611 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
VCANP13611 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
VCANP13611 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
VCANP13611 AL590664.1-201ENST00000448065 339 ntBASIC1.69□□□□□ -2.14
VCANP13611 RNU6-405P-201ENST00000516637 110 ntBASIC1.69□□□□□ -2.14
VCANP13611 RNU6-467P-201ENST00000517027 110 ntBASIC1.69□□□□□ -2.14
VCANP13611 AC087241.2-201ENST00000535801 324 ntBASIC1.69□□□□□ -2.14
VCANP13611 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC1.69□□□□□ -2.14
VCANP13611 AC008121.3-201ENST00000618726 433 ntBASIC1.69□□□□□ -2.14
VCANP13611 CKS1BP5-201ENST00000434172 273 ntBASIC1.68□□□□□ -2.14
VCANP13611 XKRY2-201ENST00000442362 1093 ntBASIC1.68□□□□□ -2.14
VCANP13611 HMGN2P18-201ENST00000450680 270 ntBASIC1.68□□□□□ -2.14
VCANP13611 AC109471.1-201ENST00000511631 612 ntBASIC1.68□□□□□ -2.14
VCANP13611 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.68□□□□□ -2.14
VCANP13611 AC090970.3-201ENST00000612566 866 ntBASIC1.68□□□□□ -2.14
VCANP13611 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
VCANP13611 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC1.68□□□□□ -2.14
VCANP13611 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC1.68□□□□□ -2.14
VCANP13611 AL159169.1-201ENST00000421119 127 ntBASIC1.68□□□□□ -2.14
VCANP13611 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.68□□□□□ -2.14
VCANP13611 EZH2P1-201ENST00000431167 291 ntBASIC1.68□□□□□ -2.14
VCANP13611 AC105313.1-201ENST00000509121 353 ntBASIC1.68□□□□□ -2.14
VCANP13611 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.68□□□□□ -2.14
VCANP13611 RMST_6.1-201ENST00000611980 203 ntBASIC1.68□□□□□ -2.14
VCANP13611 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
VCANP13611 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
VCANP13611 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC1.68□□□□□ -2.14
VCANP13611 HMGB1P12-201ENST00000438594 598 ntBASIC1.68□□□□□ -2.14
VCANP13611 COX6CP14-201ENST00000469580 174 ntBASIC1.68□□□□□ -2.14
VCANP13611 AC036111.3-201ENST00000526389 112 ntBASIC1.68□□□□□ -2.14
VCANP13611 AC104581.2-201ENST00000572227 430 ntBASIC1.68□□□□□ -2.14
VCANP13611 AC098679.5-201ENST00000624394 571 ntBASIC1.68□□□□□ -2.14
VCANP13611 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
VCANP13611 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.67□□□□□ -2.14
VCANP13611 MIR373-201ENST00000362273 69 ntBASIC1.67□□□□□ -2.14
VCANP13611 Y_RNA.274-201ENST00000364714 101 ntBASIC1.67□□□□□ -2.14
VCANP13611 snoU13.3-201ENST00000459441 104 ntBASIC1.67□□□□□ -2.14
VCANP13611 MIR3186-201ENST00000577404 85 ntBASIC1.67□□□□□ -2.14
VCANP13611 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC1.67□□□□□ -2.14
VCANP13611 ZNF355P-201ENST00000427301 3216 ntBASIC1.67□□□□□ -2.14
VCANP13611 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
VCANP13611 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.67□□□□□ -2.14
VCANP13611 RNU6-316P-201ENST00000391027 107 ntBASIC1.67□□□□□ -2.14
VCANP13611 EIF1AXP1-201ENST00000419267 435 ntBASIC1.67□□□□□ -2.14
VCANP13611 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.67□□□□□ -2.14
VCANP13611 AC087373.1-201ENST00000524920 491 ntBASIC1.67□□□□□ -2.14
VCANP13611 AC110774.1-201ENST00000623567 2018 ntBASIC1.67□□□□□ -2.14
VCANP13611 XKRYP4-201ENST00000414395 483 ntBASIC1.67□□□□□ -2.14
VCANP13611 XKRYP5-201ENST00000449659 483 ntBASIC1.67□□□□□ -2.14
VCANP13611 RPL23AP44-201ENST00000482216 473 ntBASIC1.67□□□□□ -2.14
VCANP13611 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.67□□□□□ -2.14
VCANP13611 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.67□□□□□ -2.14
VCANP13611 AC012640.5-201ENST00000623897 319 ntBASIC1.67□□□□□ -2.14
VCANP13611 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.67□□□□□ -2.14
VCANP13611 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC1.66□□□□□ -2.14
VCANP13611 AC079804.2-201ENST00000490376 200 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms