Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HMGB1P45-201ENST00000435986 653 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 USP9YP15-201ENST00000442391 422 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.8□□□□□ -2.12
COL6A3P12111 AC021087.2-201ENST00000504656 1203 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 FABP5P5-201ENST00000515537 406 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.8□□□□□ -2.12
COL6A3P12111 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
COL6A3P12111 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
COL6A3P12111 TAS2R15P-201ENST00000390674 928 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 TOMM22P1-201ENST00000418578 312 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 AC096992.1-201ENST00000459808 709 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC1.8□□□□□ -2.12
COL6A3P12111 AC103810.8-201ENST00000607347 118 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 AC068944.2-201ENST00000610373 403 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.8□□□□□ -2.12
COL6A3P12111 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
COL6A3P12111 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC1.79□□□□□ -2.12
COL6A3P12111 AL513331.1-201ENST00000411908 397 ntBASIC1.79□□□□□ -2.12
COL6A3P12111 MTCYBP12-201ENST00000440559 1134 ntBASIC1.79□□□□□ -2.12
COL6A3P12111 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL6A3P12111 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC1.79□□□□□ -2.12
COL6A3P12111 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC1.79□□□□□ -2.12
COL6A3P12111 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.79□□□□□ -2.12
COL6A3P12111 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC1.79□□□□□ -2.12
COL6A3P12111 SETP7-201ENST00000552169 453 ntBASIC1.79□□□□□ -2.12
COL6A3P12111 DNAJC8P1-201ENST00000554535 372 ntBASIC1.79□□□□□ -2.12
COL6A3P12111 RMST_6.1-201ENST00000611980 203 ntBASIC1.79□□□□□ -2.12
COL6A3P12111 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.79□□□□□ -2.12
COL6A3P12111 MAPK10-266ENST00000641066 6555 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 VTRNA1-3-201ENST00000365645 89 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 RPL23AP44-201ENST00000482216 473 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
COL6A3P12111 HMGB1P47-201ENST00000511281 589 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 STMN1P1-201ENST00000617809 440 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 AC010297.1-201ENST00000623948 149 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 ANKRD62P1-201ENST00000434304 1623 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
COL6A3P12111 Y_RNA.167-201ENST00000363735 109 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 SNORD6-201ENST00000365444 73 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 THAP5P1-201ENST00000439089 262 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 AC009474.2-201ENST00000451383 136 ntBASIC1.78□□□□□ -2.12
COL6A3P12111 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC1.78□□□□□ -2.12
COL6A3P12111 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.78□□□□□ -2.12
COL6A3P12111 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC1.78□□□□□ -2.12
COL6A3P12111 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
COL6A3P12111 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.77□□□□□ -2.13
COL6A3P12111 RFC5P1-201ENST00000454419 874 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 RPL7P5-201ENST00000471472 736 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
COL6A3P12111 MTCO3P13-201ENST00000577757 781 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 AC083806.3-201ENST00000614016 455 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 AC007342.9-201ENST00000623877 1385 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.77□□□□□ -2.13
COL6A3P12111 UBE2L2-201ENST00000254302 429 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.77□□□□□ -2.13
COL6A3P12111 SETP8-201ENST00000435341 628 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 RPL21P2-201ENST00000440049 481 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.77□□□□□ -2.13
COL6A3P12111 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC1.77□□□□□ -2.13
COL6A3P12111 RNA5SP402-201ENST00000517148 110 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 AC012640.5-201ENST00000623897 319 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 RNA5SP331-201ENST00000364986 107 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 DEFA7P-201ENST00000382676 285 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.77□□□□□ -2.13
COL6A3P12111 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
COL6A3P12111 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.77□□□□□ -2.13
COL6A3P12111 VN1R74P-201ENST00000613259 503 ntBASIC1.77□□□□□ -2.13
COL6A3P12111 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.77□□□□□ -2.13
COL6A3P12111 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.77□□□□□ -2.13
COL6A3P12111 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
COL6A3P12111 SNORD114-27-201ENST00000363766 70 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.76□□□□□ -2.13
COL6A3P12111 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
COL6A3P12111 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC1.76□□□□□ -2.13
COL6A3P12111 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.76□□□□□ -2.13
COL6A3P12111 CR383656.8-201ENST00000549046 145 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 MIR5000-201ENST00000577717 103 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 AC103810.1-201ENST00000579873 453 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 AP000787.2-201ENST00000604432 568 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 AC013562.2-201ENST00000611632 603 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 AC008121.3-201ENST00000618726 433 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
COL6A3P12111 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC1.76□□□□□ -2.13
COL6A3P12111 AMD1P1-201ENST00000457220 922 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 NF1P5-201ENST00000588287 448 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 AC008133.2-201ENST00000624540 351 ntBASIC1.76□□□□□ -2.13
COL6A3P12111 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
COL6A3P12111 SNORA26.7-201ENST00000391288 122 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 DHFRP5-201ENST00000406944 564 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.75□□□□□ -2.13
COL6A3P12111 RNA5SP121-201ENST00000516537 101 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.75□□□□□ -2.13
COL6A3P12111 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.75□□□□□ -2.13
COL6A3P12111 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC1.75□□□□□ -2.13
COL6A3P12111 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL6A3P12111 AL137003.2-201ENST00000606924 2538 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 RNU6-174P-201ENST00000410406 106 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 DUXAP8-207ENST00000456786 622 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 AC008571.1-201ENST00000467232 300 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 GTF2IP9-201ENST00000502460 301 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms