Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 OR51A3P-201ENST00000413596 924 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 MTCO3P12-201ENST00000416718 547 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 ELOCP9-201ENST00000418624 239 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 AL139281.1-201ENST00000422120 335 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 AL365338.1-201ENST00000422282 858 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC4P09017 AC006548.1-201ENST00000427470 102 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 MTND5P25-201ENST00000430499 799 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 RPS6P15-201ENST00000431996 751 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXC4P09017 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC4P09017 AL135938.1-201ENST00000443141 297 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXC4P09017 OR6K5P-201ENST00000447050 945 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC4P09017 NECAP1P2-201ENST00000455668 727 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 RN7SL633P-201ENST00000488974 297 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC4P09017 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC4P09017 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXC4P09017 AC084024.2-201ENST00000503480 791 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC4P09017 MTCO3P44-201ENST00000510977 541 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC4P09017 RNU6-416P-201ENST00000516265 103 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 RNU1-103P-201ENST00000516502 125 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 RNA5SP468-201ENST00000516782 93 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 snoZ278.1-201ENST00000517059 112 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC4P09017 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXC4P09017 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXC4P09017 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXC4P09017 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXC4P09017 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC4P09017 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC4P09017 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC4P09017 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXC4P09017 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
HOXC4P09017 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXC4P09017 AP000676.3-201ENST00000623299 569 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 CR381572.1-201ENST00000625098 102 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 AC084035.1-201ENST00000634543 607 ntBASIC2.88□□□□□ -1.95
HOXC4P09017 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
HOXC4P09017 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
HOXC4P09017 AC010733.2-201ENST00000589496 5702 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXC4P09017 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXC4P09017 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXC4P09017 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HOXC4P09017 RNVU1-3-201ENST00000364313 161 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 DEFB109C-201ENST00000382575 264 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 DEFB109B-201ENST00000382656 264 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 Y_RNA.510-201ENST00000384511 114 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 RNU4-78P-201ENST00000410940 126 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 RAD23BP2-201ENST00000416003 1207 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC009518.2-201ENST00000418056 731 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 ZDHHC20P2-201ENST00000424108 429 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 TXNL1P1-201ENST00000429528 554 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 RPS20P5-201ENST00000434808 360 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC244505.4-201ENST00000434905 287 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 YWHAZP7-201ENST00000436906 631 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 RPL21P2-201ENST00000440049 481 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 SSXP5-201ENST00000443473 287 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AL162389.1-201ENST00000449233 177 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXC4P09017 ART2BP-201ENST00000453501 499 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC146507.2-201ENST00000460608 476 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 RPS27AP1-201ENST00000475545 471 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC117522.3-201ENST00000507974 584 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 HIGD1AP13-201ENST00000509878 289 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 RN7SKP43-201ENST00000516173 320 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC4P09017 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXC4P09017 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC4P09017 AC010653.1-201ENST00000571108 881 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC4P09017 AL358072.1-201ENST00000604156 575 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC025588.3-201ENST00000604182 274 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 VIS1.1-201ENST00000610517 203 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC4P09017 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 AC090116.1-201ENST00000615679 446 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC4P09017 AC079416.3-201ENST00000624479 549 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC4P09017 LRRC77P-213ENST00000637727 880 ntBASIC2.87□□□□□ -1.95
HOXC4P09017 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC4P09017 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXC4P09017 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
HOXC4P09017 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXC4P09017 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms