Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PCDHGA1Q9Y5H4 CEP170P1-201ENST00000502249 4587 ntBASIC3.41□□□□□ -1.86
PCDHGA1Q9Y5H4 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PCDHGA1Q9Y5H4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PCDHGA1Q9Y5H4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.41□□□□□ -1.86
PCDHGA1Q9Y5H4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
PCDHGA1Q9Y5H4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PCDHGA1Q9Y5H4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
PCDHGA1Q9Y5H4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
PCDHGA1Q9Y5H4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.4□□□□□ -1.86
PCDHGA1Q9Y5H4 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AL122016.1-201ENST00000403365 367 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 USP9YP33-201ENST00000412220 421 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 MTCO2P21-201ENST00000419780 677 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AL953862.1-201ENST00000423016 168 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 RPL21P40-201ENST00000428586 483 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 USP9YP35-201ENST00000435696 412 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AC234775.1-201ENST00000454247 670 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 USP9YP10-201ENST00000454868 628 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 snoU13.8-201ENST00000458890 104 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 SNORD59.2-201ENST00000516873 68 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 RNU6-579P-201ENST00000516879 102 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 EEF1A1P37-201ENST00000522748 715 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AP000926.4-201ENST00000527351 454 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 OR4T1P-201ENST00000554933 911 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 MIR5680-201ENST00000577577 84 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 MIR5004-201ENST00000579078 107 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AC112220.3-201ENST00000605502 502 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AC008962.1-201ENST00000605729 304 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 AC009570.1-201ENST00000609599 745 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 MFSD8-233ENST00000641482 4860 ntBASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
PCDHGA1Q9Y5H4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 RNU6-952P-201ENST00000391164 108 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 RPL30P2-201ENST00000414021 291 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 TRIM60P18-201ENST00000441518 828 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AL592447.1-201ENST00000447592 540 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 RPL36AP33-201ENST00000450395 310 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 RPS3AP14-201ENST00000483907 780 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC004069.2-201ENST00000505438 1114 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC110794.1-201ENST00000505816 425 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 MTND4LP22-201ENST00000508209 276 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 PHBP14-201ENST00000512887 367 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 RN7SKP287-201ENST00000516546 266 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC105185.1-201ENST00000518705 535 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AL606834.2-201ENST00000602954 668 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC106900.2-201ENST00000604994 317 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC093424.1-201ENST00000604999 338 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AL355816.2-201ENST00000610049 647 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC079395.3-201ENST00000615161 484 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AL138880.2-201ENST00000616214 239 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 Z83843.1-201ENST00000604070 3685 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 MTCO1P9-201ENST00000505577 1534 ntBASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PCDHGA1Q9Y5H4 DDX43P2-201ENST00000604753 1354 ntBASIC3.38□□□□□ -1.87
PCDHGA1Q9Y5H4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
PCDHGA1Q9Y5H4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.38□□□□□ -1.87
PCDHGA1Q9Y5H4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PCDHGA1Q9Y5H4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDHGA1Q9Y5H4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDHGA1Q9Y5H4 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PCDHGA1Q9Y5H4 AL354719.1-201ENST00000406535 843 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms