Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AP001646.1-201ENST00000527936 915 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 PHBP17-201ENST00000528576 541 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AK6P1-201ENST00000540219 478 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AL845331.3-202ENST00000562856 261 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC053481.3-201ENST00000577881 843 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC006270.2-201ENST00000578523 652 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC011816.2-201ENST00000607089 556 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC008536.2-201ENST00000607284 349 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AL138721.1-201ENST00000616756 179 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC005609.4-201ENST00000625071 447 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 AC008013.2-202ENST00000637965 364 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 MIR492-201ENST00000638676 116 ntBASIC4.28□□□□□ -1.72
DKK3Q9UBP4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
DKK3Q9UBP4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.28□□□□□ -1.73
DKK3Q9UBP4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
DKK3Q9UBP4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 ELL2P4-201ENST00000446870 1376 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC073544.1-201ENST00000600110 1595 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 SNORA72.1-201ENST00000363485 129 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 RNU6-356P-201ENST00000384140 107 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 SNORA70E-201ENST00000384492 135 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 MIR513A2-201ENST00000385249 127 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 RPL32P23-201ENST00000397237 405 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 SSXP10-201ENST00000402595 565 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 RNU6-195P-201ENST00000411352 109 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 MTATP6P27-201ENST00000416987 621 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AL139413.1-201ENST00000421309 217 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC133104.1-201ENST00000429100 218 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 MTCO2P11-201ENST00000431069 680 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 RPL23AP83-201ENST00000434984 473 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC114755.5-201ENST00000447760 831 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 RPL7P19-201ENST00000469948 618 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC007182.2-201ENST00000489251 402 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 Y_RNA.702-201ENST00000516843 96 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC022616.6-201ENST00000520479 119 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AP003181.2-201ENST00000528941 181 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AL390208.1-201ENST00000605885 644 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 BX664608.1-201ENST00000610519 487 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC009159.1-201ENST00000618386 642 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 AC091905.1-201ENST00000624400 311 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 MIR1321-201ENST00000637766 79 ntBASIC4.27□□□□□ -1.73
DKK3Q9UBP4 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.27□□□□□ -1.73
DKK3Q9UBP4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms