Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 SNORA22B-201ENST00000383876 138 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 Y_RNA.384-201ENST00000383909 102 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 Y_RNA.452-201ENST00000384202 108 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC068050.1-201ENST00000394891 380 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 RNU6-1068P-201ENST00000410958 103 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC062016.2-201ENST00000420950 676 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC092832.1-201ENST00000422934 400 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AL953862.1-201ENST00000423016 168 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 Z74021.1-201ENST00000423610 407 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AL157831.1-201ENST00000426134 473 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 SNORA84-201ENST00000459229 133 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC027575.1-201ENST00000481064 460 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 RN7SL283P-201ENST00000489055 303 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 RPL21P129-201ENST00000491732 478 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 Y_RNA.672-201ENST00000516289 104 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 IGKV2-36-201ENST00000519999 223 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 AP002812.4-201ENST00000532139 286 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC013828.2-201ENST00000532487 235 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 MIR3682-201ENST00000581338 84 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC021646.1-201ENST00000605469 484 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC040168.1-201ENST00000623594 991 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.47□□□□□ -1.69
CHFRQ96EP1 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CHFRQ96EP1 NXPH1-205ENST00000602349 1953 ntBASIC4.47□□□□□ -1.69
CHFRQ96EP1 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CHFRQ96EP1 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CHFRQ96EP1 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.46□□□□□ -1.69
CHFRQ96EP1 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
CHFRQ96EP1 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
CHFRQ96EP1 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CHFRQ96EP1 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
CHFRQ96EP1 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CHFRQ96EP1 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC092435.4-201ENST00000623012 4159 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 CDR1-202ENST00000625883 1485 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 RNU1-83P-201ENST00000363426 164 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 RNU1-39P-201ENST00000383897 165 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 Y_RNA.387-201ENST00000383918 102 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 RNU6-639P-201ENST00000384074 107 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 MIR23B-201ENST00000384832 97 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 RNU6-628P-201ENST00000410675 107 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 MTND3P8-201ENST00000412909 339 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AL589872.1-201ENST00000426602 288 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC133104.1-201ENST00000429100 218 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 CBX3P6-201ENST00000430257 527 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC010307.1-201ENST00000467206 836 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC083798.1-201ENST00000472671 131 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AF213884.1-201ENST00000488102 463 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC005741.1-201ENST00000511094 432 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 Y_RNA.720-201ENST00000517166 92 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 DEFB131D-201ENST00000526803 184 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 POLR2KP1-201ENST00000553226 168 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 CYCSP2-201ENST00000558168 301 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AP001180.3-201ENST00000582221 145 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 NRBF2P1-201ENST00000587407 859 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC068790.5-201ENST00000602741 355 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AL365434.2-201ENST00000607979 234 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 AC007546.1-201ENST00000619452 559 ntBASIC4.46□□□□□ -1.7
CHFRQ96EP1 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CHFRQ96EP1 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
CHFRQ96EP1 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CHFRQ96EP1 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.46□□□□□ -1.7
CHFRQ96EP1 AL672167.1-205ENST00000641112 3080 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CHFRQ96EP1 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms