Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 IGHVII-60-1-201ENST00000519079 256 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 AL121603.1-201ENST00000553815 142 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 AC044860.2-201ENST00000561005 179 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 XIAPP1-201ENST00000603162 600 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 AC090525.3-201ENST00000605601 189 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 AC046143.2-201ENST00000609789 160 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 MIR7515-201ENST00000637837 67 ntBASIC1.13□□□□□ -2.23
LINC00643Q86TS7 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
LINC00643Q86TS7 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 POLHP1-201ENST00000411806 470 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 HMGB3P31-201ENST00000413333 595 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 MTCO3P4-201ENST00000419236 787 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC009237.2-201ENST00000421358 284 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AIMP1P2-201ENST00000425294 312 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 RPL37P1-201ENST00000432310 284 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AL035246.1-201ENST00000433554 1255 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 snoU109.1-201ENST00000459339 135 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC080014.1-201ENST00000496877 1201 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC021146.2-201ENST00000504736 556 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC008885.2-201ENST00000509506 930 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 SNRPGP16-201ENST00000533275 226 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC074050.1-201ENST00000563247 211 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC135628.1-201ENST00000568867 534 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 MIR5089-201ENST00000580047 84 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 ATP1B3P1-201ENST00000605365 821 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 uc_338.5-201ENST00000611839 155 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 CR392039.5-201ENST00000623201 510 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC109454.4-201ENST00000623411 649 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC244517.12-201ENST00000623581 663 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 BX649567.1-201ENST00000642071 1134 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC022031.1-201ENST00000585985 2593 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AL359893.1-201ENST00000447628 1580 ntBASIC1.12□□□□□ -2.23
LINC00643Q86TS7 AC008555.8-201ENST00000623602 2168 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AP000648.3-201ENST00000623539 4507 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 ZNF702P-202ENST00000434269 1966 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL122016.1-201ENST00000403365 367 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL138885.1-201ENST00000405921 675 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 RNU4-78P-201ENST00000410940 126 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC236972.1-201ENST00000433225 199 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL357134.1-201ENST00000445848 426 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 PNPLA4P1-201ENST00000458328 305 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC068781.1-201ENST00000488231 618 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 RPL23AP63-201ENST00000498752 471 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AP001960.1-201ENST00000506494 658 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC010374.2-201ENST00000512933 535 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 RNA5SP356-201ENST00000515972 94 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 RNU6-928P-201ENST00000516876 104 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 OR5AL2P-201ENST00000532185 920 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 CBX3P7-201ENST00000532876 502 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL160236.1-201ENST00000556317 195 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 MTCYBP23-201ENST00000558717 1102 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC024940.4-201ENST00000605507 246 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 MIR7112-201ENST00000616126 65 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 RMST_5.1-201ENST00000618704 126 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 AL359715.4-201ENST00000606629 1436 ntBASIC1.11□□□□□ -2.23
LINC00643Q86TS7 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
LINC00643Q86TS7 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC126755.2-208ENST00000327792 462 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC138969.1-213ENST00000331436 462 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms