Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.54□□□□□ -2.16
USF3Q68DE3 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 MTCO3P21-201ENST00000430791 643 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 MTCYBP45-201ENST00000435243 565 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 NDUFA5P4-201ENST00000436704 385 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.54□□□□□ -2.16
USF3Q68DE3 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 SNORD108-201ENST00000459332 71 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC1.54□□□□□ -2.16
USF3Q68DE3 ARL4AP2-201ENST00000507378 601 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC1.54□□□□□ -2.16
USF3Q68DE3 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.54□□□□□ -2.16
USF3Q68DE3 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 AC104581.2-201ENST00000572227 430 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 AC084768.2-201ENST00000622736 221 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.54□□□□□ -2.16
USF3Q68DE3 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.53□□□□□ -2.16
USF3Q68DE3 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
USF3Q68DE3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.16
USF3Q68DE3 Y_RNA.191-201ENST00000363972 113 ntBASIC1.53□□□□□ -2.16
USF3Q68DE3 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
USF3Q68DE3 RNA5SP489-201ENST00000410986 109 ntBASIC1.53□□□□□ -2.16
USF3Q68DE3 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC1.53□□□□□ -2.16
USF3Q68DE3 TRAPPC2P5-201ENST00000426293 308 ntBASIC1.53□□□□□ -2.16
USF3Q68DE3 AL590762.3-201ENST00000436372 640 ntBASIC1.53□□□□□ -2.16
USF3Q68DE3 TRIM60P18-201ENST00000441518 828 ntBASIC1.53□□□□□ -2.16
USF3Q68DE3 VN1R96P-201ENST00000446052 858 ntBASIC1.53□□□□□ -2.16
USF3Q68DE3 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.53□□□□□ -2.16
USF3Q68DE3 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.53□□□□□ -2.16
USF3Q68DE3 AL133393.1-201ENST00000603277 287 ntBASIC1.53□□□□□ -2.16
USF3Q68DE3 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.53□□□□□ -2.16
USF3Q68DE3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.17
USF3Q68DE3 RNA5SP295-201ENST00000362655 121 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 HSPE1P26-201ENST00000405341 275 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 MIR1294-201ENST00000408503 142 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC1.52□□□□□ -2.17
USF3Q68DE3 RNU2-68P-201ENST00000410878 191 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AL138799.3-201ENST00000438968 350 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC1.52□□□□□ -2.17
USF3Q68DE3 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
USF3Q68DE3 IGLV3-17-201ENST00000519099 244 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.52□□□□□ -2.17
USF3Q68DE3 AC239860.2-201ENST00000525886 270 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AP000790.1-201ENST00000528891 737 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.52□□□□□ -2.17
USF3Q68DE3 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC1.52□□□□□ -2.17
USF3Q68DE3 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.52□□□□□ -2.17
USF3Q68DE3 AC020895.1-201ENST00000595362 272 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AC083899.3-201ENST00000603413 594 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 MIR8081-201ENST00000611533 95 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AL158801.5-201ENST00000623123 465 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AC004943.3-201ENST00000624116 600 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
USF3Q68DE3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
USF3Q68DE3 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
USF3Q68DE3 AL589994.1-201ENST00000404962 340 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 RNU4-74P-201ENST00000411280 161 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 UBE2V2P1-201ENST00000434717 398 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.52□□□□□ -2.17
USF3Q68DE3 RNU7-95P-201ENST00000459222 64 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AP000873.1-201ENST00000463987 400 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC1.52□□□□□ -2.17
USF3Q68DE3 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.52□□□□□ -2.17
USF3Q68DE3 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
USF3Q68DE3 AC107393.1-201ENST00000512403 346 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 TRMT112P2-201ENST00000512910 132 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 MIR3683-201ENST00000580847 82 ntBASIC1.52□□□□□ -2.17
USF3Q68DE3 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.52□□□□□ -2.17
USF3Q68DE3 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC1.52□□□□□ -2.17
USF3Q68DE3 MFF-206ENST00000392059 1710 ntTSL 5 BASIC1.52□□□□□ -2.17
USF3Q68DE3 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
USF3Q68DE3 Z98749.2-208ENST00000381646 500 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RNU4-52P-201ENST00000384209 138 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 MIR1276-201ENST00000408707 83 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RPL17P12-201ENST00000413391 526 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
USF3Q68DE3 HMGB3P30-201ENST00000457863 606 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AC055855.1-201ENST00000489563 579 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RNU6-250P-201ENST00000516958 103 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC1.51□□□□□ -2.17
USF3Q68DE3 COX6CP5-201ENST00000527162 228 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AC007115.1-201ENST00000546853 234 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.51□□□□□ -2.17
USF3Q68DE3 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC006270.2-201ENST00000578523 652 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 MIR3935-201ENST00000583472 104 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.51□□□□□ -2.17
USF3Q68DE3 Z82195.2-201ENST00000612348 18351 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
USF3Q68DE3 RPL21P75-201ENST00000396599 483 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RPL21P28-201ENST00000401418 483 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AL592114.1-201ENST00000403842 483 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 HMGB1P13-201ENST00000406019 642 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC092473.1-201ENST00000441098 221 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RPL23AP16-201ENST00000441715 421 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms