Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AL513185.3-201ENST00000433335 1300 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 OR5BR1P-201ENST00000524992 1330 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 MIR22-201ENST00000362190 85 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 CD24P4-201ENST00000382840 243 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 RPS4XP3-201ENST00000398541 413 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AL356131.1-201ENST00000405826 414 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AL590084.1-201ENST00000407885 387 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 MTATP6P27-201ENST00000416987 621 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 RPL23AP76-201ENST00000441860 458 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 RAC1P7-201ENST00000445367 377 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 OR6K5P-201ENST00000447050 945 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC034236.1-201ENST00000469891 373 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 PRELID3BP6-201ENST00000503839 571 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC114981.1-201ENST00000503897 678 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 RNU6-583P-201ENST00000516012 92 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 OR4K8P-201ENST00000578842 1048 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC015688.2-201ENST00000584523 262 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC024220.1-201ENST00000603675 484 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC069234.5-201ENST00000611056 416 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 AC007318.2-201ENST00000620999 243 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 LRRC77P-213ENST00000637727 880 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 TAB3P1-202ENST00000452645 1634 ntBASIC3.3□□□□□ -1.88
CCDC40Q4G0X9 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 RNU6-1122P-201ENST00000384449 107 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 RNA5SP80-201ENST00000410475 111 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 BEND7P1-201ENST00000422058 457 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AL451062.2-201ENST00000427515 271 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 NANOGP2-201ENST00000435391 727 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 COX6CP2-201ENST00000444980 225 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AL590664.1-201ENST00000448065 339 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 MTCO3P11-201ENST00000455103 774 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 RPL18AP17-201ENST00000455326 198 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 RPS26P21-201ENST00000475397 348 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 RN7SL504P-201ENST00000494496 287 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC114322.1-201ENST00000506771 926 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC008837.2-201ENST00000513076 418 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC022861.1-201ENST00000522981 663 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 BNIP3P27-201ENST00000599991 412 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC012119.1-201ENST00000603184 222 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 BNIP3P11-201ENST00000603878 563 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC004853.1-201ENST00000604902 698 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AL121652.1-201ENST00000608851 448 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC069200.1-201ENST00000609511 323 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC009269.6-201ENST00000621778 588 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AP003122.6-201ENST00000623831 495 ntBASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC40Q4G0X9 AC011460.1-201ENST00000636268 1834 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 MTND4P9-201ENST00000507819 1346 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 MIR122-201ENST00000385044 85 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 MIR493-201ENST00000385254 89 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 AL592310.1-201ENST00000414330 671 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 MTCYBP45-201ENST00000435243 565 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 AC011979.1-201ENST00000472300 483 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 RPL21P131-201ENST00000497298 483 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 DUXAP11-201ENST00000603858 526 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 AC108206.1-201ENST00000570186 4159 ntBASIC3.28□□□□□ -1.88
CCDC40Q4G0X9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.28□□□□□ -1.89
CCDC40Q4G0X9 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms