Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 U8.10-201ENST00000384260 133 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AC104332.2-201ENST00000429959 156 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 MTCO1P43-201ENST00000431831 488 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 NDUFA5P4-201ENST00000436704 385 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 HMGB1P26-201ENST00000452520 628 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AC005840.1-201ENST00000498412 377 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 NDUFA5P6-201ENST00000542110 379 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AC068790.3-201ENST00000602988 553 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 RPL23AP88-201ENST00000605759 454 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AC091046.2-201ENST00000620775 665 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 YWHAEP7-203ENST00000622054 312 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AC002064.3-201ENST00000623448 346 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 AL157700.1-201ENST00000561973 1432 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 ELOCP11-201ENST00000436690 332 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 HMGN2P20-201ENST00000437531 273 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 ELOCP16-201ENST00000444494 332 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 PCNAP1-201ENST00000505363 709 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 NAMPTP2-201ENST00000505629 1115 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC025857.1-201ENST00000525252 377 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AL133393.1-201ENST00000603277 287 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AL359821.1-201ENST00000605519 182 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AL589994.2-201ENST00000621124 579 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC091953.2-201ENST00000623979 160 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC005005.2-201ENST00000420779 380 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 TRIM60P3Y-201ENST00000432201 673 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC090515.1-201ENST00000465295 476 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC034102.8-201ENST00000615146 484 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 AC119674.1-220ENST00000641502 1048 ntBASIC2.48□□□□□ -2.01
CCDC88AQ3V6T2 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 AC244517.1-201ENST00000606030 2086 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 DNAJC19P6-201ENST00000401853 280 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 MTND4P13-201ENST00000402078 1023 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 AP000567.1-201ENST00000406413 156 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 BTF3P4-201ENST00000418852 495 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 RPS26P30-201ENST00000443431 335 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 RSL24D1P2-201ENST00000445584 366 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 RNU6-1004P-201ENST00000516584 111 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 AC115989.2-201ENST00000578640 563 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 SNRPGP15-201ENST00000600149 222 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 HMGB1P51-201ENST00000605166 638 ntBASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.47□□□□□ -2.01
CCDC88AQ3V6T2 RNU6-666P-201ENST00000363499 107 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 RNU6-707P-201ENST00000364647 95 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 RNU6-1140P-201ENST00000410517 106 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 RPL37P6-202ENST00000464216 403 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AC140059.1-201ENST00000489238 361 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 MIR4474-201ENST00000579189 78 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AL356280.1-201ENST00000603614 379 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AC131902.3-201ENST00000611767 581 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AC006065.5-201ENST00000623427 349 ntBASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC88AQ3V6T2 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 RNU6-670P-201ENST00000364312 104 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 Y_RNA.355-201ENST00000365462 98 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 RNU1-101P-201ENST00000391171 127 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 RNU2-71P-201ENST00000411395 189 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AF274854.1-201ENST00000413236 615 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC005517.2-201ENST00000424673 553 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AL627224.1-201ENST00000448334 444 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC111193.1-201ENST00000504097 155 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms