Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-1279P-201ENST00000383917 103 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.453-201ENST00000384223 109 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-278P-201ENST00000390945 109 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-754P-201ENST00000391166 107 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 RN7SKP263-201ENST00000411194 309 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AL391219.1-201ENST00000422570 483 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 RWDD4P2-201ENST00000426392 563 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 FTH1P1-201ENST00000437933 532 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 MTCO3P18-201ENST00000440206 761 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 WASF1P1-201ENST00000447560 1131 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC079382.1-201ENST00000493346 557 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP154-201ENST00000516193 111 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.693-201ENST00000516641 110 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC022616.3-201ENST00000523940 148 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 DEFB109D-201ENST00000529497 240 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC025678.1-201ENST00000567861 338 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC006254.3-201ENST00000603353 884 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AP001330.5-201ENST00000607176 411 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC067931.1-201ENST00000624190 671 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC009161.2-201ENST00000624626 138 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 MIR1321-201ENST00000637766 79 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.76
PTCHD3Q3KNS1 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
PTCHD3Q3KNS1 AL356489.2-201ENST00000566968 3528 ntBASIC4.09□□□□□ -1.76
PTCHD3Q3KNS1 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
PTCHD3Q3KNS1 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
PTCHD3Q3KNS1 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.76
PTCHD3Q3KNS1 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.09□□□□□ -1.76
PTCHD3Q3KNS1 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC011266.1-201ENST00000624119 3569 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RHOT1P2-201ENST00000366423 333 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AL022722.2-201ENST00000402519 180 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 LAP3P1-201ENST00000403648 294 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RNA5SP317-201ENST00000410176 116 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RNA5SP311-201ENST00000411290 116 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 HMGB3P20-201ENST00000417997 600 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC004552.1-201ENST00000419089 348 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RPS15AP12-201ENST00000419498 388 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 OR1AA1P-201ENST00000419597 916 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 ELOCP4-201ENST00000420090 333 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 BEND7P1-201ENST00000422058 457 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 OR4C10P-201ENST00000434991 931 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 NDUFS5P3-201ENST00000450668 321 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RPS26P3-201ENST00000470205 348 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC090543.2-201ENST00000483963 348 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC004057.1-201ENST00000485827 348 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RPL7P23-201ENST00000493874 747 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 FAM92A1P2-202ENST00000504766 877 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC021146.1-201ENST00000511202 716 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RNA5SP315-201ENST00000516340 116 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RNA5SP312-201ENST00000517068 116 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC011979.2-201ENST00000527568 352 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC109635.3-201ENST00000529536 185 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AP000857.1-201ENST00000532151 543 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC069240.1-201ENST00000548774 375 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC063950.1-201ENST00000552036 308 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 OR4T1P-201ENST00000554933 911 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC138915.3-201ENST00000562908 1389 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms