Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6ATAC23P-201ENST00000408448 123 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 RNU6-1050P-201ENST00000410388 107 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 RNU2-15P-201ENST00000410692 191 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 RPL30P2-201ENST00000414021 291 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 AL139095.3-201ENST00000419672 1203 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 E2F6P2-201ENST00000420708 748 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX4Q06945 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.22□□□□□ -1.57
SOX4Q06945 RPS15AP27-201ENST00000449183 343 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.22□□□□□ -1.57
SOX4Q06945 RPL21P8-201ENST00000465083 535 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 RN7SL738P-201ENST00000470264 297 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 HMGB1P21-201ENST00000502313 581 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 Y_RNA.670-201ENST00000516255 105 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 RNU6-64P-201ENST00000517119 105 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.22□□□□□ -1.57
SOX4Q06945 GNAI2P1-201ENST00000541815 315 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SOX4Q06945 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC5.22□□□□□ -1.57
SOX4Q06945 AC022726.1-201ENST00000587475 207 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 AC008745.1-201ENST00000604064 271 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 AC012443.1-201ENST00000605605 231 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 FAM27B-201ENST00000610601 213 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 AC107871.2-201ENST00000612894 502 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX4Q06945 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.22□□□□□ -1.57
SOX4Q06945 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SOX4Q06945 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.21□□□□□ -1.57
SOX4Q06945 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 Y_RNA.473-201ENST00000384333 102 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 RNU6-1127P-201ENST00000384580 107 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 MIR192-201ENST00000384915 110 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SOX4Q06945 MIR548I3-201ENST00000408378 149 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 MIR548I1-201ENST00000408810 149 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.21□□□□□ -1.58
SOX4Q06945 AC114755.2-201ENST00000413520 361 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX4Q06945 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.21□□□□□ -1.58
SOX4Q06945 AL031736.2-201ENST00000426573 787 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.21□□□□□ -1.58
SOX4Q06945 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SOX4Q06945 AC022431.1-201ENST00000450941 438 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 HMGB3P21-201ENST00000452483 547 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX4Q06945 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX4Q06945 RPL12P20-201ENST00000475538 479 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX4Q06945 AC116655.1-201ENST00000508324 901 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX4Q06945 Y_RNA.721-201ENST00000517207 102 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX4Q06945 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX4Q06945 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX4Q06945 ATP1B3P1-201ENST00000605365 821 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 MIR6853-201ENST00000619642 74 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 AP000346.3-201ENST00000622821 210 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 ZNF734P-201ENST00000419494 1534 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 AC009643.2-201ENST00000603543 1448 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 AC011755.1-201ENST00000623763 2049 ntBASIC5.21□□□□□ -1.58
SOX4Q06945 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SOX4Q06945 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX4Q06945 AC097461.1-201ENST00000568928 2821 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX4Q06945 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX4Q06945 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX4Q06945 ZNF33CP-201ENST00000432492 2030 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX4Q06945 AL590240.1-201ENST00000334118 313 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 RNU6-960P-201ENST00000364056 120 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX4Q06945 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SOX4Q06945 Y_RNA.594-201ENST00000410373 140 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 RNU6-387P-201ENST00000411331 105 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 RNA5SP107-201ENST00000411358 122 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 BX682237.1-201ENST00000415016 335 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX4Q06945 BX510359.2-201ENST00000417920 305 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC009965.2-201ENST00000425328 970 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 EZH2P1-201ENST00000431167 291 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 AC105402.2-201ENST00000438503 358 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX4Q06945 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms