Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MIR4506-201ENST00000584693 77 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 AL645939.4-201ENST00000604495 135 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
COL7A1Q02388 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
COL7A1Q02388 RNY1P4-201ENST00000384595 115 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.25□□□□□ -2.21
COL7A1Q02388 TOMM22P1-201ENST00000418578 312 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 AC013470.3-201ENST00000420252 1194 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 AC008571.1-201ENST00000467232 300 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.25□□□□□ -2.21
COL7A1Q02388 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
COL7A1Q02388 7SK.7-201ENST00000603504 247 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC1.25□□□□□ -2.21
COL7A1Q02388 AC013562.2-201ENST00000611632 603 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
COL7A1Q02388 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
COL7A1Q02388 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
COL7A1Q02388 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.25□□□□□ -2.21
COL7A1Q02388 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.25□□□□□ -2.21
COL7A1Q02388 SNORA26.7-201ENST00000391288 122 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.25□□□□□ -2.21
COL7A1Q02388 AC090255.1-201ENST00000495779 349 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 RNU6-1223P-201ENST00000517124 104 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 AC019176.1-201ENST00000518519 225 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC1.25□□□□□ -2.21
COL7A1Q02388 MYL12BP1-201ENST00000569826 507 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 AC098848.2-201ENST00000588023 330 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 OR10AB1P-201ENST00000609613 938 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
COL7A1Q02388 SNORA50A-202ENST00000629536 136 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
COL7A1Q02388 MTND5P7-201ENST00000413558 1798 ntBASIC1.25□□□□□ -2.21
COL7A1Q02388 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
COL7A1Q02388 POLHP1-201ENST00000411806 470 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 AC073310.1-201ENST00000423226 1033 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.24□□□□□ -2.21
COL7A1Q02388 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.24□□□□□ -2.21
COL7A1Q02388 USP9YP10-201ENST00000454868 628 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.24□□□□□ -2.21
COL7A1Q02388 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC1.24□□□□□ -2.21
COL7A1Q02388 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.24□□□□□ -2.21
COL7A1Q02388 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.24□□□□□ -2.21
COL7A1Q02388 AL133216.2-202ENST00000634512 349 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.24□□□□□ -2.21
COL7A1Q02388 MTND4P23-201ENST00000447723 1363 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
COL7A1Q02388 AL121972.1-201ENST00000402023 252 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.24□□□□□ -2.21
COL7A1Q02388 RPL7P53-201ENST00000421245 739 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
COL7A1Q02388 RPS29P1-201ENST00000465274 159 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 AC010265.1-201ENST00000513509 211 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.24□□□□□ -2.21
COL7A1Q02388 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.24□□□□□ -2.21
COL7A1Q02388 AC034268.2-201ENST00000571784 482 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 MIR4421-201ENST00000578133 69 ntBASIC1.24□□□□□ -2.21
COL7A1Q02388 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.24□□□□□ -2.21
COL7A1Q02388 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
COL7A1Q02388 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC1.23□□□□□ -2.21
COL7A1Q02388 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.23□□□□□ -2.21
COL7A1Q02388 RBM6-203ENST00000421682 684 ntTSL 2 BASIC1.23□□□□□ -2.21
COL7A1Q02388 AC129850.1-201ENST00000436203 508 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 XKRY2-201ENST00000442362 1093 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.23□□□□□ -2.21
COL7A1Q02388 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.23□□□□□ -2.21
COL7A1Q02388 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.23□□□□□ -2.21
COL7A1Q02388 AC008126.1-201ENST00000549019 480 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL7A1Q02388 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL7A1Q02388 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.23□□□□□ -2.21
COL7A1Q02388 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.23□□□□□ -2.21
COL7A1Q02388 COX6CP12-201ENST00000446748 202 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 Z99714.1-201ENST00000450463 807 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 SNORA31.15-201ENST00000516771 132 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 AC002487.1-201ENST00000604565 994 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 AC012150.2-201ENST00000621300 544 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 U6.98-201ENST00000637157 84 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
COL7A1Q02388 DDX10P1-201ENST00000448545 1933 ntBASIC1.23□□□□□ -2.21
COL7A1Q02388 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL7A1Q02388 RNU6-60P-201ENST00000364792 103 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 SNORA51.12-201ENST00000384448 134 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 EIF1AXP1-201ENST00000419267 435 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.22□□□□□ -2.21
COL7A1Q02388 AC098934.3-201ENST00000430450 190 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC1.22□□□□□ -2.21
COL7A1Q02388 USP9YP7-201ENST00000436723 430 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 BNIP3P2-201ENST00000441221 577 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.22□□□□□ -2.21
COL7A1Q02388 USP9YP32-201ENST00000452432 430 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.22□□□□□ -2.21
COL7A1Q02388 AC025033.1-201ENST00000463883 194 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AC022634.1-201ENST00000520765 532 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AC067805.1-201ENST00000559344 470 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AL356575.1-201ENST00000603008 283 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 uc_338.5-201ENST00000611839 155 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.22□□□□□ -2.21
COL7A1Q02388 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
COL7A1Q02388 OR4G1P-203ENST00000641984 1631 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms