Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC112653.1-201ENST00000443851 386 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.87□□□□□ -1.79
PTPN9P43378 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.87□□□□□ -1.79
PTPN9P43378 MTND1P27-201ENST00000451117 902 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.87□□□□□ -1.79
PTPN9P43378 MTCO3P20-201ENST00000454926 688 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 RPL23AP41-201ENST00000484754 458 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.87□□□□□ -1.79
PTPN9P43378 AF131216.2-201ENST00000512316 564 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 AP003467.2-201ENST00000520175 319 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PTPN9P43378 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.87□□□□□ -1.79
PTPN9P43378 AP002453.2-201ENST00000533503 320 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.87□□□□□ -1.79
PTPN9P43378 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.87□□□□□ -1.79
PTPN9P43378 AL020997.2-201ENST00000602607 184 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 AC131902.3-201ENST00000611767 581 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
PTPN9P43378 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
PTPN9P43378 AP000553.6-201ENST00000641242 118 ntBASIC3.87□□□□□ -1.79
PTPN9P43378 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PTPN9P43378 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.87□□□□□ -1.79
PTPN9P43378 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.87□□□□□ -1.79
PTPN9P43378 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.86□□□□□ -1.79
PTPN9P43378 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.86□□□□□ -1.79
PTPN9P43378 MTND5P33-201ENST00000571250 1450 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.86□□□□□ -1.79
PTPN9P43378 AC011460.1-201ENST00000636268 1834 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.86□□□□□ -1.79
PTPN9P43378 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.86□□□□□ -1.79
PTPN9P43378 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
PTPN9P43378 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PTPN9P43378 Y_RNA.46-201ENST00000362695 102 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 RNU6-263P-201ENST00000363811 107 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 Y_RNA.505-201ENST00000384489 102 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
PTPN9P43378 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PTPN9P43378 RPS20P2-201ENST00000402520 389 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 SNORA57.3-201ENST00000411095 141 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
PTPN9P43378 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 USP9YP13-201ENST00000417797 480 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 HMGB3P20-201ENST00000417997 600 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AC099677.1-201ENST00000420575 175 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.86□□□□□ -1.79
PTPN9P43378 AL353777.1-201ENST00000425552 326 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 MTND4LP10-201ENST00000435146 291 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 NDUFB1P1-201ENST00000435191 180 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 MTND1P34-201ENST00000438556 671 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.86□□□□□ -1.79
PTPN9P43378 RPS20P32-201ENST00000456044 356 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AC099563.1-201ENST00000456086 418 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.86□□□□□ -1.79
PTPN9P43378 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.86□□□□□ -1.79
PTPN9P43378 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 RN7SKP83-201ENST00000516512 178 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 RNU6-405P-201ENST00000516637 110 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 NARSP2-201ENST00000518524 679 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 AC007991.1-201ENST00000522680 631 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.86□□□□□ -1.79
PTPN9P43378 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 ZNF519P3-201ENST00000557158 1032 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.86□□□□□ -1.79
PTPN9P43378 SEPT7P9-203ENST00000604116 343 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AC011451.2-201ENST00000604303 598 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 NDUFA8P1-201ENST00000605525 367 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.86□□□□□ -1.79
PTPN9P43378 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AP001506.1-201ENST00000615444 211 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 AC099654.13-201ENST00000639774 207 ntBASIC3.86□□□□□ -1.79
PTPN9P43378 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PTPN9P43378 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PTPN9P43378 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PTPN9P43378 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
PTPN9P43378 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.85□□□□□ -1.79
PTPN9P43378 RNU6-348P-201ENST00000384386 107 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 U8.11-201ENST00000384699 133 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 U8.12-201ENST00000384701 133 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 SNORA40.3-201ENST00000390964 122 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 AL583834.1-201ENST00000406943 343 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 AC244098.2-201ENST00000422068 99 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 USP9YP7-201ENST00000436723 430 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.85□□□□□ -1.79
PTPN9P43378 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.85□□□□□ -1.79
PTPN9P43378 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.85□□□□□ -1.79
PTPN9P43378 USP9YP32-201ENST00000452432 430 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.85□□□□□ -1.79
PTPN9P43378 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.85□□□□□ -1.79
PTPN9P43378 HMGN2P7-201ENST00000456186 273 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.85□□□□□ -1.79
PTPN9P43378 HMGB3P30-201ENST00000457863 606 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 U8.18-201ENST00000459285 133 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 RPL7L1P8-201ENST00000469911 741 ntBASIC3.85□□□□□ -1.79
PTPN9P43378 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
PTPN9P43378 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.85□□□□□ -1.79
PTPN9P43378 CDC42P4-201ENST00000510507 563 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms