Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SCARNA17.2-201ENST00000516334 143 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 IGKV2D-36-201ENST00000518643 226 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 AC026616.1-201ENST00000523157 525 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 AC068339.2-201ENST00000534395 618 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.82□□□□□ -1.96
BRCA1P38398 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.82□□□□□ -1.96
BRCA1P38398 AP001029.3-201ENST00000588063 596 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.82□□□□□ -1.96
BRCA1P38398 AL022099.1-201ENST00000604551 712 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 AC079791.1-201ENST00000605356 973 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 HMGN2P28-201ENST00000606102 262 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 SCARNA17.4-201ENST00000614296 143 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.82□□□□□ -1.96
BRCA1P38398 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.82□□□□□ -1.96
BRCA1P38398 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.82□□□□□ -1.96
BRCA1P38398 MIR219B-201ENST00000637023 88 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 WWP1P1-201ENST00000466609 2769 ntBASIC2.82□□□□□ -1.96
BRCA1P38398 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
BRCA1P38398 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
BRCA1P38398 Y_RNA.796-201ENST00000364268 102 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 Y_RNA.799-201ENST00000364992 102 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 Y_RNA.338-201ENST00000365320 114 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 RN7SKP123-201ENST00000410732 291 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 MTND2P16-201ENST00000419987 799 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.81□□□□□ -1.96
BRCA1P38398 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.81□□□□□ -1.96
BRCA1P38398 ZNF736P6Y-201ENST00000447526 1213 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 OR51B8P-201ENST00000449892 769 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 snoU13.3-201ENST00000459441 104 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 AC012181.1-201ENST00000479895 423 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.81□□□□□ -1.96
BRCA1P38398 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.81□□□□□ -1.96
BRCA1P38398 HIGD1AP6-201ENST00000521833 279 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.81□□□□□ -1.96
BRCA1P38398 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.81□□□□□ -1.96
BRCA1P38398 BNIP3P4-201ENST00000604946 565 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 AC103710.1-201ENST00000610003 901 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 AC020658.4-201ENST00000613987 684 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 Z99129.2-201ENST00000619967 314 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 AL359893.1-201ENST00000447628 1580 ntBASIC2.81□□□□□ -1.96
BRCA1P38398 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
BRCA1P38398 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
BRCA1P38398 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
BRCA1P38398 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
BRCA1P38398 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.8□□□□□ -1.96
BRCA1P38398 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.8□□□□□ -1.96
BRCA1P38398 RNU6-14P-201ENST00000384630 106 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.8□□□□□ -1.96
BRCA1P38398 RNU2-2P-201ENST00000410396 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 AL445183.3-201ENST00000414168 502 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC2.8□□□□□ -1.96
BRCA1P38398 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.8□□□□□ -1.96
BRCA1P38398 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
BRCA1P38398 RPL23AP16-201ENST00000441715 421 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.8□□□□□ -1.96
BRCA1P38398 NF1P3-201ENST00000457709 450 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 AC108729.3-201ENST00000513484 108 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.8□□□□□ -1.96
BRCA1P38398 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.8□□□□□ -1.96
BRCA1P38398 AC069234.5-201ENST00000611056 416 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.15-201ENST00000611544 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.16-201ENST00000613119 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.12-201ENST00000613778 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.20-201ENST00000613956 192 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.9-201ENST00000615427 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.11-201ENST00000616345 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.2-201ENST00000616535 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.3-201ENST00000617785 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.19-201ENST00000618602 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 RNU2-1-201ENST00000618664 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.6-201ENST00000619225 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.5-201ENST00000619465 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 U2.10-201ENST00000620268 191 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 AC073055.1-201ENST00000456901 1621 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
BRCA1P38398 AC007256.1-201ENST00000392253 2765 ntBASIC2.8□□□□□ -1.96
BRCA1P38398 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
BRCA1P38398 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
BRCA1P38398 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
BRCA1P38398 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
BRCA1P38398 RNU6-50P-201ENST00000362356 103 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
BRCA1P38398 AC073264.1-201ENST00000411508 416 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC244505.4-201ENST00000434905 287 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 SSXP5-201ENST00000443473 287 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC015724.1-201ENST00000478577 156 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.79□□□□□ -1.96
BRCA1P38398 YWHAQP7-201ENST00000603536 658 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC113368.1-201ENST00000603736 382 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC020923.1-201ENST00000624021 917 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC025263.3-201ENST00000622965 1396 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 MTCO1P4-201ENST00000520516 1409 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
BRCA1P38398 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.79□□□□□ -1.96
BRCA1P38398 VN1R42P-201ENST00000424651 344 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 RPL21P66-201ENST00000426566 466 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC108667.1-201ENST00000428618 249 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 HMGB1P12-201ENST00000438594 598 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.79□□□□□ -1.96
BRCA1P38398 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms