Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPS26P28-201ENST00000470806 348 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.38□□□□□ -1.71
MSX2P35548 RN7SL222P-201ENST00000476452 299 ntBASIC4.38□□□□□ -1.71
MSX2P35548 RPS23P1-201ENST00000491662 432 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.38□□□□□ -1.71
MSX2P35548 PPBPP1-201ENST00000510807 373 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC005741.1-201ENST00000511094 432 ntBASIC4.38□□□□□ -1.71
MSX2P35548 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.38□□□□□ -1.71
MSX2P35548 Y_RNA.711-201ENST00000516993 102 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX2P35548 RPL7P20-201ENST00000520308 745 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.38□□□□□ -1.71
MSX2P35548 AC024224.1-201ENST00000538284 609 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.38□□□□□ -1.71
MSX2P35548 SETP2-201ENST00000553886 926 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX2P35548 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.38□□□□□ -1.71
MSX2P35548 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.38□□□□□ -1.71
MSX2P35548 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX2P35548 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.38□□□□□ -1.71
MSX2P35548 AC106900.2-201ENST00000604994 317 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC010680.4-201ENST00000605334 543 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AL022345.1-201ENST00000607292 135 ntBASIC4.38□□□□□ -1.71
MSX2P35548 MIR6798-201ENST00000612887 67 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC130324.3-201ENST00000614165 542 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC040168.1-201ENST00000623594 991 ntBASIC4.38□□□□□ -1.71
MSX2P35548 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.38□□□□□ -1.71
MSX2P35548 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
MSX2P35548 AC074029.4-201ENST00000624796 1859 ntBASIC4.38□□□□□ -1.71
MSX2P35548 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
MSX2P35548 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSX2P35548 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.38□□□□□ -1.71
MSX2P35548 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.37□□□□□ -1.71
MSX2P35548 EIF2AP4-201ENST00000424793 1781 ntBASIC4.37□□□□□ -1.71
MSX2P35548 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.37□□□□□ -1.71
MSX2P35548 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 AL139276.1-201ENST00000311910 1001 ntBASIC4.37□□□□□ -1.71
MSX2P35548 Y_RNA.144-201ENST00000363521 113 ntBASIC4.37□□□□□ -1.71
MSX2P35548 Y_RNA.146-201ENST00000363549 102 ntBASIC4.37□□□□□ -1.71
MSX2P35548 RNU5A-8P-201ENST00000364102 114 ntBASIC4.37□□□□□ -1.71
MSX2P35548 U3.12-201ENST00000364498 214 ntBASIC4.37□□□□□ -1.71
MSX2P35548 Y_RNA.301-201ENST00000364990 103 ntBASIC4.37□□□□□ -1.71
MSX2P35548 SNORA33.2-201ENST00000365413 134 ntBASIC4.37□□□□□ -1.71
MSX2P35548 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 MIR558-201ENST00000384920 94 ntBASIC4.37□□□□□ -1.71
MSX2P35548 MIR513A2-201ENST00000385249 127 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AL359634.1-202ENST00000404721 284 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC069218.2-201ENST00000411665 344 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AL160275.2-201ENST00000412010 394 ntBASIC4.37□□□□□ -1.71
MSX2P35548 Z82205.1-201ENST00000428456 297 ntBASIC4.37□□□□□ -1.71
MSX2P35548 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.37□□□□□ -1.71
MSX2P35548 RPL21P89-201ENST00000444021 467 ntBASIC4.37□□□□□ -1.71
MSX2P35548 RPL7L1P8-201ENST00000469911 741 ntBASIC4.37□□□□□ -1.71
MSX2P35548 RPL23AP65-201ENST00000475608 468 ntBASIC4.37□□□□□ -1.71
MSX2P35548 RPL21P99-201ENST00000480369 423 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC027575.1-201ENST00000481064 460 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.37□□□□□ -1.71
MSX2P35548 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.37□□□□□ -1.71
MSX2P35548 FTH1P21-201ENST00000512179 511 ntBASIC4.37□□□□□ -1.71
MSX2P35548 Y_RNA.718-201ENST00000517110 102 ntBASIC4.37□□□□□ -1.71
MSX2P35548 RN7SKP234-201ENST00000517173 224 ntBASIC4.37□□□□□ -1.71
MSX2P35548 SNORA25.17-201ENST00000517184 124 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC008694.2-201ENST00000517591 306 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC090151.1-201ENST00000520784 730 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.37□□□□□ -1.71
MSX2P35548 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.37□□□□□ -1.71
MSX2P35548 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.37□□□□□ -1.71
MSX2P35548 MIR4424-201ENST00000585257 86 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC008782.1-201ENST00000603386 430 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC020910.3-201ENST00000603701 874 ntBASIC4.37□□□□□ -1.71
MSX2P35548 IMMP1LP3-201ENST00000604197 224 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC245517.5-201ENST00000611529 162 ntBASIC4.37□□□□□ -1.71
MSX2P35548 AC010205.1-201ENST00000616668 449 ntBASIC4.37□□□□□ -1.71
MSX2P35548 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
MSX2P35548 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.37□□□□□ -1.71
MSX2P35548 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 THAP12P4-201ENST00000528321 2266 ntBASIC4.37□□□□□ -1.71
MSX2P35548 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX2P35548 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
MSX2P35548 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX2P35548 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 Y_RNA.145-201ENST00000363527 102 ntBASIC4.36□□□□□ -1.71
MSX2P35548 Y_RNA.202-201ENST00000364083 110 ntBASIC4.36□□□□□ -1.71
MSX2P35548 RNU6-1297P-201ENST00000384415 104 ntBASIC4.36□□□□□ -1.71
MSX2P35548 MIR19A-201ENST00000384878 82 ntBASIC4.36□□□□□ -1.71
MSX2P35548 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 RN7SKP216-201ENST00000411050 312 ntBASIC4.36□□□□□ -1.71
MSX2P35548 OR1AA1P-201ENST00000419597 916 ntBASIC4.36□□□□□ -1.71
MSX2P35548 MTCO2P27-201ENST00000420740 428 ntBASIC4.36□□□□□ -1.71
MSX2P35548 RPL7L1P10-201ENST00000427790 463 ntBASIC4.36□□□□□ -1.71
MSX2P35548 MTATP6P16-201ENST00000434543 526 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms