Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
HOXA9P31269 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXA9P31269 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA9P31269 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXA9P31269 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
HOXA9P31269 AP003122.5-201ENST00000527668 3766 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA9P31269 MIR26A1-201ENST00000362205 77 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 RNU1-35P-201ENST00000362782 153 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 SNORA51.4-201ENST00000364993 124 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA9P31269 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA9P31269 SNORA26.7-201ENST00000391288 122 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 DSTNP4-201ENST00000399472 474 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 RPL7P27-201ENST00000403775 720 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 BTF3P8-201ENST00000414577 526 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 RPS7P9-201ENST00000414704 586 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 C1DP1-201ENST00000426049 402 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA9P31269 PTGES3P1-201ENST00000439531 483 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 RPL23AP58-201ENST00000440453 469 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AL513328.1-201ENST00000446460 224 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA9P31269 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA9P31269 EEF1B2P7-201ENST00000451177 676 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 AC118282.2-201ENST00000508739 374 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC109471.1-201ENST00000511631 612 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 MTATP6P9-201ENST00000515039 680 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 snoZ278.1-201ENST00000517059 112 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.89□□□□□ -1.95
HOXA9P31269 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.89□□□□□ -1.95
HOXA9P31269 AC007954.1-201ENST00000554198 494 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA9P31269 MTCYBP28-201ENST00000566728 1132 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA9P31269 AC069431.2-201ENST00000604149 1099 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC097504.2-201ENST00000608088 454 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA9P31269 AC090115.4-201ENST00000609970 188 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC104763.3-201ENST00000613765 618 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 Z99129.2-201ENST00000619967 314 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC092650.2-201ENST00000619984 902 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AL391262.2-201ENST00000622466 494 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC009039.2-201ENST00000624524 529 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 AC010608.3-201ENST00000625048 527 ntBASIC2.89□□□□□ -1.95
HOXA9P31269 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
HOXA9P31269 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA9P31269 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.89□□□□□ -1.95
HOXA9P31269 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXA9P31269 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
HOXA9P31269 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXA9P31269 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 AC109583.1-201ENST00000432156 268 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 GAPDHP27-201ENST00000447427 1020 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXA9P31269 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 AP004217.1-201ENST00000480579 346 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC119751.4-201ENST00000507498 357 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC008837.1-201ENST00000511513 412 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC096725.1-201ENST00000514266 313 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 RNU6-1028P-201ENST00000517164 93 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 SNORA31.21-201ENST00000517180 77 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 NDUFS5P6-201ENST00000529136 295 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXA9P31269 AL512310.1-201ENST00000548639 172 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXA9P31269 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 MIR4666A-201ENST00000580160 79 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 COX6CP3-201ENST00000580869 223 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC091057.3-201ENST00000602684 733 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AL121652.1-201ENST00000608851 448 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AP005137.2-201ENST00000609238 400 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC006213.4-201ENST00000616184 634 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC243829.7-201ENST00000633081 225 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
HOXA9P31269 AL445984.1-201ENST00000637834 659 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 TAB3P1-202ENST00000452645 1634 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC233263.6-201ENST00000631132 1963 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AC092593.1-201ENST00000515413 1815 ntBASIC2.88□□□□□ -1.95
HOXA9P31269 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.88□□□□□ -1.95
HOXA9P31269 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXA9P31269 AL359893.1-201ENST00000447628 1580 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXA9P31269 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HOXA9P31269 RNU5E-10P-201ENST00000363506 118 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 RNU6-799P-201ENST00000363567 107 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HOXA9P31269 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms