Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC024255.1-201ENST00000614376 102 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
COL8A1P27658 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 AC068870.1-201ENST00000563737 2455 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.07□□□□□ -1.6
COL8A1P27658 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
COL8A1P27658 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.07□□□□□ -1.6
COL8A1P27658 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.06□□□□□ -1.6
COL8A1P27658 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.06□□□□□ -1.6
COL8A1P27658 AC105749.1-201ENST00000631338 2008 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.06□□□□□ -1.6
COL8A1P27658 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 Y_RNA.215-201ENST00000364204 112 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RNU6-923P-201ENST00000364753 107 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RNU6-326P-201ENST00000365480 107 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RNU6-898P-201ENST00000365627 104 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 SNORD73A-201ENST00000386062 65 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.06□□□□□ -1.6
COL8A1P27658 RNU6-257P-201ENST00000410238 98 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RNA5SP251-201ENST00000410614 137 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RN7SKP159-201ENST00000410657 292 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC5.06□□□□□ -1.6
COL8A1P27658 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 AC006946.1-201ENST00000429106 328 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 OR6D1P-201ENST00000436165 939 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 HSPD1P21-201ENST00000436541 245 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC5.06□□□□□ -1.6
COL8A1P27658 AC104073.1-201ENST00000451988 151 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 HSPE1P25-201ENST00000455484 251 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 Y_RNA.638-201ENST00000459374 113 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RPL37P6-202ENST00000464216 403 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RPS17P15-201ENST00000475609 349 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 HMGN2P13-201ENST00000476476 274 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC5.06□□□□□ -1.6
COL8A1P27658 AC108471.1-201ENST00000513977 287 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RN7SKP67-201ENST00000515905 235 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.06□□□□□ -1.6
COL8A1P27658 AC087369.1-201ENST00000520775 996 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.06□□□□□ -1.6
COL8A1P27658 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.06□□□□□ -1.6
COL8A1P27658 MRPS21P7-201ENST00000566937 238 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RN7SL52P-201ENST00000584271 284 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.06□□□□□ -1.6
COL8A1P27658 AC098826.3-201ENST00000603823 466 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RN7SL722P-201ENST00000617780 284 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 RN7SL565P-201ENST00000618246 284 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 AC132068.1-201ENST00000623805 459 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC5.06□□□□□ -1.6
COL8A1P27658 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 AC026951.1-201ENST00000559530 2459 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL8A1P27658 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.06□□□□□ -1.6
COL8A1P27658 AC005332.9-201ENST00000620266 2921 ntBASIC5.06□□□□□ -1.6
COL8A1P27658 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
COL8A1P27658 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL8A1P27658 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL8A1P27658 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
COL8A1P27658 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.05□□□□□ -1.6
COL8A1P27658 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.05□□□□□ -1.6
COL8A1P27658 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL8A1P27658 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
COL8A1P27658 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 RNA5SP183-201ENST00000362452 119 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 RNA5SP350-201ENST00000363298 111 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 U8.8-201ENST00000365399 135 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 SNORA70.9-201ENST00000384370 135 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 RNY3P4-201ENST00000384428 101 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 AL079342.1-201ENST00000401460 267 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AL513475.1-201ENST00000406602 315 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 RPS4XP5-201ENST00000419038 768 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC093162.1-201ENST00000419682 124 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC113412.1-201ENST00000425840 504 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 MTCO1P39-201ENST00000426148 480 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 EZH2P1-201ENST00000431167 291 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms