Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC073387.2-201ENST00000604797 784 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 AC099778.2-201ENST00000610904 211 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC1.46□□□□□ -2.18
COL6A5A8TX70 AP002967.1-201ENST00000624203 539 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A5A8TX70 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
COL6A5A8TX70 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A5A8TX70 Y_RNA.136-201ENST00000363444 102 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 SNORA62.2-201ENST00000364672 152 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A5A8TX70 AL627390.1-201ENST00000396055 340 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.46□□□□□ -2.18
COL6A5A8TX70 TRIAP1P1-201ENST00000427062 225 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.46□□□□□ -2.18
COL6A5A8TX70 RPL23AP20-201ENST00000447965 421 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 NDUFB4P9-201ENST00000511646 388 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 RNA5SP121-201ENST00000516537 101 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 GLYCAM1-201ENST00000546596 285 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 AC067805.1-201ENST00000559344 470 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 AC006116.7-201ENST00000590141 756 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.46□□□□□ -2.18
COL6A5A8TX70 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC1.46□□□□□ -2.18
COL6A5A8TX70 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.46□□□□□ -2.18
COL6A5A8TX70 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 RNU1-51P-201ENST00000365345 176 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 AC008173.1-201ENST00000418901 264 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 AL138785.1-201ENST00000425821 331 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 USP9YP7-201ENST00000436723 430 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 AL691517.1-201ENST00000440833 1235 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 USP9YP32-201ENST00000452432 430 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 AC012119.1-201ENST00000603184 222 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
COL6A5A8TX70 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 MIR96-201ENST00000362288 78 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 SET-203ENST00000372688 801 ntTSL 2 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 RNU6-198P-201ENST00000384258 104 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.45□□□□□ -2.18
COL6A5A8TX70 MTND5P21-201ENST00000531961 522 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 AC136443.5-201ENST00000603741 370 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 AC010678.1-201ENST00000614118 713 ntBASIC1.45□□□□□ -2.18
COL6A5A8TX70 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL6A5A8TX70 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL6A5A8TX70 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
COL6A5A8TX70 SSXP1-201ENST00000453640 473 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 AP000926.1-201ENST00000479573 241 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 AC107393.1-201ENST00000512403 346 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC1.44□□□□□ -2.18
COL6A5A8TX70 AC008015.1-201ENST00000555505 465 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 MTCO3P13-201ENST00000577757 781 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 AC105429.2-201ENST00000610567 517 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 MIR6733-201ENST00000635723 61 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL6A5A8TX70 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.44□□□□□ -2.18
COL6A5A8TX70 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL6A5A8TX70 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
COL6A5A8TX70 Z99714.1-201ENST00000450463 807 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 AC109471.1-201ENST00000511631 612 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 RNA5SP385-201ENST00000515947 110 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 RN7SL793P-201ENST00000583259 296 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 AC002487.1-201ENST00000604565 994 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 AC006023.2-201ENST00000609916 167 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
COL6A5A8TX70 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL6A5A8TX70 CUL4AP1-201ENST00000514750 1863 ntBASIC1.44□□□□□ -2.18
COL6A5A8TX70 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.44□□□□□ -2.18
COL6A5A8TX70 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.44□□□□□ -2.18
COL6A5A8TX70 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC1.44□□□□□ -2.18
COL6A5A8TX70 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A5A8TX70 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 RNU6-666P-201ENST00000363499 107 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 MIR1294-201ENST00000408503 142 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 RNU2-20P-201ENST00000410425 191 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 RPL31P35-201ENST00000431058 377 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 RFC5P1-201ENST00000454419 874 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 RPS29P1-201ENST00000465274 159 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 AP003467.2-201ENST00000520175 319 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A5A8TX70 HPVC1-201ENST00000629899 1198 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 AL021368.2-201ENST00000606125 5352 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A5A8TX70 DEFA7P-201ENST00000382676 285 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 AC114801.2-201ENST00000503825 781 ntBASIC1.43□□□□□ -2.18
COL6A5A8TX70 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.43□□□□□ -2.18
COL6A5A8TX70 MIR151B-201ENST00000584249 96 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms