Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-238P-201ENST00000363313 106 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 RNU6-1013P-201ENST00000384180 107 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 RPL31P52-201ENST00000407532 367 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 RNU6-603P-201ENST00000411403 107 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 RPL37P10-201ENST00000412884 288 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC114755.2-201ENST00000413520 361 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC074085.1-201ENST00000413598 418 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AL590609.2-201ENST00000421430 368 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC018865.2-201ENST00000423631 129 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 SDAD1P3-201ENST00000427380 333 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 RPS17P8-201ENST00000434525 335 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC069285.2-201ENST00000440210 275 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC112498.1-201ENST00000444401 332 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 DDX3P2-201ENST00000446138 111 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 RPL12P25-201ENST00000455592 494 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 RPL5P30-201ENST00000465511 891 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 GMFBP1-201ENST00000467831 427 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 SNORA25.10-201ENST00000515926 124 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 SCARNA21.2-201ENST00000516600 166 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AP001804.3-201ENST00000525146 880 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC053481.3-201ENST00000577881 843 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC020910.3-201ENST00000603701 874 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC018462.2-201ENST00000605375 395 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC062037.2-201ENST00000610137 73 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC091953.2-201ENST00000623979 160 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AL355480.1-201ENST00000629041 99 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 MAPK10-263ENST00000641052 4307 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 TLK1P1-201ENST00000456760 2440 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RNY1P12-201ENST00000364251 105 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RNU6-657P-201ENST00000383904 107 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RNU6-606P-201ENST00000384721 111 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AL049697.2-201ENST00000403708 294 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 MIR548M-201ENST00000408260 86 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC078974.1-201ENST00000411597 223 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 HNRNPDLP1-201ENST00000412834 550 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC009965.2-201ENST00000425328 970 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC018638.3-201ENST00000461273 132 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC006967.1-201ENST00000467608 589 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RN7SL177P-201ENST00000476596 299 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RPL7AP6-201ENST00000477943 801 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RPL21P99-201ENST00000480369 423 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RPS4XP14-201ENST00000493072 781 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 RNU6-1088P-201ENST00000516850 104 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 IGKV2-36-201ENST00000519999 223 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 HIGD1AP6-201ENST00000521833 279 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC100770.1-201ENST00000532310 322 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC107918.3-201ENST00000533272 382 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC090502.2-201ENST00000549267 280 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC007375.1-201ENST00000554513 578 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC090312.1-201ENST00000580637 348 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 MIR3942-201ENST00000585264 109 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC121334.2-201ENST00000605387 271 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC100812.1-201ENST00000607622 580 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AL355816.1-201ENST00000607951 118 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 OR10AB1P-201ENST00000609613 938 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AC007485.1-201ENST00000616755 206 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 uc_338.11-201ENST00000619132 160 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 AL049641.1-201ENST00000441055 1948 ntBASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
CCDC39Q9UFE4 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms