Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 MTATP6P27-201ENST00000416987 621 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 PSMA6P3-201ENST00000428242 164 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 FTH1P1-201ENST00000437933 532 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 SYPL1P1-201ENST00000473622 768 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 LINC00888-204ENST00000487386 421 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 MIR2114-201ENST00000516645 80 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC104986.1-201ENST00000517978 436 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC105185.1-201ENST00000518705 535 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC239860.2-201ENST00000525886 270 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 UBTFL10-201ENST00000528532 562 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 ELOCP29-201ENST00000588193 334 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AL669831.4-202ENST00000590817 238 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 BNIP3P10-201ENST00000605360 577 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AL139418.1-201ENST00000613613 177 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC040168.1-201ENST00000623594 991 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC017037.3-201ENST00000625016 472 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 AC244205.2-202ENST00000635781 342 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 SAGE4P-201ENST00000442271 3381 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 FAM35BP-202ENST00000497389 3337 ntBASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 SNORD67-201ENST00000390833 111 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 RPL23AP29-201ENST00000397284 453 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC119751.3-201ENST00000399720 670 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 FNDC3CP-201ENST00000420795 1155 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC019178.2-201ENST00000423595 505 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC002075.2-201ENST00000425207 252 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AL121890.1-201ENST00000435457 205 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC005297.2-201ENST00000450430 606 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 ELOCP23-201ENST00000452014 332 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AL109933.2-201ENST00000452651 260 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 MTCO3P16-201ENST00000454456 754 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC004263.1-201ENST00000479327 332 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC090453.1-201ENST00000495560 436 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 FCF1P3-201ENST00000496394 590 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 OR5H5P-201ENST00000503164 928 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 DEFB131D-201ENST00000526803 184 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC091544.4-201ENST00000555268 342 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC141257.3-201ENST00000572906 215 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 Z99289.3-201ENST00000605586 594 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 AC131159.1-201ENST00000621854 213 ntBASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF541Q9H0D2 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 MAPK10-373ENST00000641983 6772 ntBASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 SNORD113-6-201ENST00000363345 75 ntBASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 RNA5SP167-201ENST00000365461 116 ntBASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 RNU6-730P-201ENST00000383954 104 ntBASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 RNA5SP56-201ENST00000410277 118 ntBASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 RNA5SP184-201ENST00000411071 108 ntBASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF541Q9H0D2 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms