Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU1-18P-201ENST00000363062 164 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 RNU6-553P-201ENST00000364047 96 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 RNU6-343P-201ENST00000364709 104 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 U3.19-201ENST00000390893 196 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 HSPE1P26-201ENST00000405341 275 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 BX323014.1-201ENST00000412876 237 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 Z99497.1-201ENST00000421282 135 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AL390023.1-201ENST00000428836 262 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AL512649.1-201ENST00000428997 581 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 HMGB1P15-201ENST00000453854 435 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 RPL23AP62-201ENST00000463396 453 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 SNRPGP3-201ENST00000469405 227 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 BZW1P2-201ENST00000473537 826 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC022447.3-201ENST00000506865 495 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC008489.1-201ENST00000524271 483 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 OR5AP1P-201ENST00000529730 940 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 RPL21P12-201ENST00000559810 515 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC099489.2-201ENST00000574976 260 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC011471.1-201ENST00000585766 187 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 SNRPGP15-201ENST00000600149 222 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 DUXAP11-201ENST00000603858 526 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC112187.2-201ENST00000604345 283 ntBASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC3Q9BQI4 FRG1CP-201ENST00000358464 769 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 RNU6-1249P-201ENST00000363237 111 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 RNU6-263P-201ENST00000363811 107 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 SNORA7.2-201ENST00000364446 145 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC127526.1-201ENST00000417526 366 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 RPL21P109-201ENST00000422213 475 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AL513174.1-201ENST00000423182 629 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AL445567.1-201ENST00000439121 144 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC002381.1-201ENST00000447049 280 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC115115.1-201ENST00000449927 248 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 BX322784.1-201ENST00000455793 1077 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 ST13P14-201ENST00000474095 734 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC078785.3-201ENST00000476607 425 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 TMED11P-201ENST00000479478 690 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC111000.2-201ENST00000507775 550 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 RNU6-579P-201ENST00000516879 102 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC128687.1-201ENST00000605304 619 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 MIR7844-201ENST00000616161 122 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AL356585.4-201ENST00000623078 1229 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AP000676.3-201ENST00000623299 569 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AC006927.3-201ENST00000638789 384 ntBASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC3Q9BQI4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RNA5SP189-201ENST00000364920 115 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AL031577.2-201ENST00000404133 280 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RNU4-78P-201ENST00000410940 126 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 Z83846.1-201ENST00000446798 265 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 PAXBP1P1-201ENST00000449315 447 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RPS24P6-201ENST00000452670 400 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms