Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL031679.1-201ENST00000400616 525 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AL449283.1-202ENST00000418249 604 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AL158071.1-201ENST00000430315 461 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 TXNP1-201ENST00000441872 371 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC093392.2-201ENST00000450682 337 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC006445.1-201ENST00000491925 405 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 FCF1P3-201ENST00000496394 590 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC080014.1-201ENST00000496877 1201 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC114322.1-201ENST00000506771 926 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 PCBP2P3-201ENST00000509726 843 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 RN7SKP31-201ENST00000516354 278 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 MIR3921-201ENST00000577308 85 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC090615.1-201ENST00000577519 154 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC093732.2-201ENST00000607950 274 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC018645.2-201ENST00000609151 472 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AP003122.6-201ENST00000623831 495 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC026422.1-201ENST00000623961 452 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AL137790.1-201ENST00000634283 177 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 MAPK10-362ENST00000641864 4484 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 AC008568.2-201ENST00000623862 2313 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC017071.1-201ENST00000564407 2204 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 OR5BR1P-201ENST00000524992 1330 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RNU6-28P-201ENST00000362378 107 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 SNORA40.2-201ENST00000390847 128 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RNA5SP252-201ENST00000391131 119 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AL356968.1-201ENST00000416622 474 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 MTCO2P5-201ENST00000422621 426 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RPL7P46-201ENST00000425129 740 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 DPPA2P1-201ENST00000428060 556 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RPL31P60-201ENST00000478450 367 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RN7SL429P-201ENST00000479090 223 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RN7SL489P-201ENST00000486185 223 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RN7SL327P-201ENST00000488659 223 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 MTCYBP17-201ENST00000503579 789 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RNU6-583P-201ENST00000516012 92 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 SNORA19.3-201ENST00000516165 130 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RN7SKP60-201ENST00000516985 239 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC093331.1-201ENST00000521474 169 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 VN1R83P-201ENST00000595685 445 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC069304.2-201ENST00000605154 435 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AP000254.1-201ENST00000609934 520 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 uc_338.1-201ENST00000612113 180 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 PART1_2.1-201ENST00000612397 250 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AL157817.1-201ENST00000614264 790 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AL138880.2-201ENST00000616214 239 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 RN7SL853P-201ENST00000617250 223 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC091046.2-201ENST00000620775 665 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC106858.1-201ENST00000637497 429 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 ZNF826P-207ENST00000622273 1910 ntBASIC3.29□□□□□ -1.88
HDDC3Q8N4P3 AC005539.1-201ENST00000443768 1479 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 RPS3AP24-201ENST00000407896 734 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 MIR1290-201ENST00000408735 78 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 RN7SKP284-201ENST00000411002 343 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC007899.1-201ENST00000412776 775 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 ATP5C1P1-201ENST00000441945 895 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 TRGVB-201ENST00000453257 471 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC022483.1-201ENST00000514020 567 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC239860.2-201ENST00000525886 270 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms