Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC080013.4-201ENST00000607624 649 ntBASIC2.85□□□□□ -1.95
SKA3Q8IX90 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.85□□□□□ -1.95
SKA3Q8IX90 AC069200.1-201ENST00000609511 323 ntBASIC2.85□□□□□ -1.95
SKA3Q8IX90 AC245297.2-201ENST00000610119 565 ntBASIC2.85□□□□□ -1.95
SKA3Q8IX90 AL157817.1-201ENST00000614264 790 ntBASIC2.85□□□□□ -1.95
SKA3Q8IX90 AC009464.1-201ENST00000615731 469 ntBASIC2.85□□□□□ -1.95
SKA3Q8IX90 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.85□□□□□ -1.95
SKA3Q8IX90 AC084757.4-201ENST00000616350 526 ntBASIC2.85□□□□□ -1.95
SKA3Q8IX90 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.85□□□□□ -1.95
SKA3Q8IX90 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.85□□□□□ -1.95
SKA3Q8IX90 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
SKA3Q8IX90 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
SKA3Q8IX90 OR5BR1P-201ENST00000524992 1330 ntBASIC2.85□□□□□ -1.95
SKA3Q8IX90 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SKA3Q8IX90 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
SKA3Q8IX90 AL390862.1-201ENST00000635467 1469 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 RPL7P26-201ENST00000333817 754 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 RNA5SP72-201ENST00000364442 117 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 RNA5SP267-201ENST00000364893 126 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 RNVU1-14-201ENST00000384770 164 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 SNORA26.7-201ENST00000391288 122 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 HMGB1P17-201ENST00000403495 628 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 MIR1284-201ENST00000408337 120 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 RNA5SP229-201ENST00000410809 99 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 MTND4LP10-201ENST00000435146 291 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 Z80107.1-201ENST00000436830 412 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 Z99127.3-201ENST00000448158 395 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 Z82190.1-201ENST00000454534 490 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 RPL21P8-201ENST00000465083 535 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC004062.1-201ENST00000509926 645 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC074250.1-201ENST00000511117 192 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 HSPA8P13-201ENST00000523715 472 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 CYCSP2-201ENST00000558168 301 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC012182.1-201ENST00000570133 895 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC010653.1-201ENST00000571108 881 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 ZNF415P1-201ENST00000582279 1166 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC024220.1-201ENST00000603675 484 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC073657.2-201ENST00000605661 303 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC006270.3-201ENST00000605967 1036 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.84□□□□□ -1.95
SKA3Q8IX90 AL590240.3-201ENST00000621416 943 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC023510.2-201ENST00000622162 746 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AC231657.1-201ENST00000624313 397 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 AP000776.1-201ENST00000530032 1663 ntBASIC2.84□□□□□ -1.95
SKA3Q8IX90 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SKA3Q8IX90 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SKA3Q8IX90 RPL23AP57-201ENST00000332361 466 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 MIR34B-201ENST00000385076 84 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL357075.1-201ENST00000404107 726 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL354719.1-201ENST00000406535 843 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 RNA5SP129-201ENST00000410276 118 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 RNA5SP44-201ENST00000410446 133 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 MTATP6P27-201ENST00000416987 621 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC005326.1-201ENST00000429197 123 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL590233.1-201ENST00000430017 456 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 Z75741.1-201ENST00000446793 314 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 RNU7-136P-201ENST00000458819 69 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC097493.1-201ENST00000463958 372 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 RPL7P49-201ENST00000471402 708 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL024509.2-201ENST00000493462 493 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC096751.1-202ENST00000502691 1067 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC022861.1-201ENST00000522981 663 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 NBEAP1-201ENST00000554452 979 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.83□□□□□ -1.96
SKA3Q8IX90 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SKA3Q8IX90 MIR4760-201ENST00000585040 80 ntBASIC2.83□□□□□ -1.96
SKA3Q8IX90 AC097478.2-201ENST00000610572 514 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms