Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC005951.2-201ENST00000576282 495 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.09□□□□□ -1.59
COL8A1P27658 MIR4282-201ENST00000583613 67 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.09□□□□□ -1.59
COL8A1P27658 AC012119.1-201ENST00000603184 222 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 AL158032.1-201ENST00000605401 106 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 FAM25E-202ENST00000608562 189 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.09□□□□□ -1.59
COL8A1P27658 AL589994.2-201ENST00000621124 579 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 AC100821.1-201ENST00000523153 2479 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.09□□□□□ -1.59
COL8A1P27658 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.59
COL8A1P27658 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
COL8A1P27658 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
COL8A1P27658 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
COL8A1P27658 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL8A1P27658 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL8A1P27658 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
COL8A1P27658 SAMMSON-226ENST00000642089 1582 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.08□□□□□ -1.6
COL8A1P27658 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.08□□□□□ -1.6
COL8A1P27658 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 AC005261.2-201ENST00000593427 4258 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 AC116667.1-201ENST00000604855 2072 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 Y_RNA.127-201ENST00000363386 109 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 RNU6-595P-201ENST00000363944 107 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 RNU6-449P-201ENST00000383914 107 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 RNU6-45P-201ENST00000384471 107 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 RNU6-102P-201ENST00000384485 104 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.08□□□□□ -1.6
COL8A1P27658 IGKV1OR9-2-201ENST00000431378 277 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 AL591043.1-201ENST00000432461 424 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.08□□□□□ -1.6
COL8A1P27658 AC016925.1-201ENST00000458303 298 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 AC083982.1-201ENST00000485679 344 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 RPL32P33-201ENST00000487023 394 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 AC005726.1-201ENST00000494679 427 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.08□□□□□ -1.6
COL8A1P27658 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.08□□□□□ -1.6
COL8A1P27658 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 IGHV1-14-201ENST00000523391 241 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC5.08□□□□□ -1.6
COL8A1P27658 RNU6-85P-201ENST00000605989 107 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC5.08□□□□□ -1.6
COL8A1P27658 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.08□□□□□ -1.6
COL8A1P27658 AC097063.1-201ENST00000426714 1797 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.08□□□□□ -1.6
COL8A1P27658 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.08□□□□□ -1.6
COL8A1P27658 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.08□□□□□ -1.6
COL8A1P27658 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL8A1P27658 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL8A1P27658 GTF2IP4-201ENST00000453092 2054 ntBASIC5.08□□□□□ -1.6
COL8A1P27658 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 AC004656.1-201ENST00000568479 4951 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AC068769.1-201ENST00000474767 2426 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 SNORD8-201ENST00000363915 110 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
COL8A1P27658 RNU6-933P-201ENST00000384424 107 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 Y_RNA.504-201ENST00000384481 104 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 Y_RNA.590-201ENST00000410140 107 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 RNU2-61P-201ENST00000411069 191 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 RNU6-325P-201ENST00000411132 105 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 RNU5E-9P-201ENST00000411164 104 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.07□□□□□ -1.6
COL8A1P27658 AC073063.1-201ENST00000434352 607 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 FRG2FP-204ENST00000453982 852 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AL445433.1-201ENST00000457507 257 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 RN7SL346P-201ENST00000491561 294 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AC097462.2-201ENST00000504623 481 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.07□□□□□ -1.6
COL8A1P27658 AC006427.1-201ENST00000514359 712 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 Y_RNA.679-201ENST00000516416 91 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AP006245.1-201ENST00000522549 120 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.07□□□□□ -1.6
COL8A1P27658 ERHP1-201ENST00000523006 310 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.07□□□□□ -1.6
COL8A1P27658 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.07□□□□□ -1.6
COL8A1P27658 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.07□□□□□ -1.6
COL8A1P27658 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL8A1P27658 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.07□□□□□ -1.6
COL8A1P27658 AC068790.4-201ENST00000602474 263 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 AC126915.2-201ENST00000610957 190 ntBASIC5.07□□□□□ -1.6
COL8A1P27658 uc_338.26-201ENST00000612659 160 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms