Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Gm11355-201ENSMUST00000121120 306 ntBASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Prpf40aQ9R1C7 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Prpf40aQ9R1C7 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Prpf40aQ9R1C7 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Prpf40aQ9R1C7 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Gm11336-201ENSMUST00000118168 334 ntBASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Prpf40aQ9R1C7 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Dancr-204ENSMUST00000132389 2347 ntBASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Prpf40aQ9R1C7 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms