Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clp1Q99LI9 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.19■□□□□ 0.34
Clp1Q99LI9 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Gm26308-201ENSMUST00000157768 69 ntBASIC17.19■□□□□ 0.34
Clp1Q99LI9 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC17.19■□□□□ 0.34
Clp1Q99LI9 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clp1Q99LI9 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Gm43182-201ENSMUST00000199476 2528 ntBASIC17.18■□□□□ 0.34
Clp1Q99LI9 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clp1Q99LI9 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.17■□□□□ 0.34
Clp1Q99LI9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.17■□□□□ 0.34
Clp1Q99LI9 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Gm27646-201ENSMUST00000183989 110 ntBASIC17.17■□□□□ 0.34
Clp1Q99LI9 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.17■□□□□ 0.34
Clp1Q99LI9 Gm11873-201ENSMUST00000117877 1304 ntBASIC17.17■□□□□ 0.34
Clp1Q99LI9 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clp1Q99LI9 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.16■□□□□ 0.34
Clp1Q99LI9 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.16■□□□□ 0.34
Clp1Q99LI9 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC17.16■□□□□ 0.34
Clp1Q99LI9 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.16■□□□□ 0.34
Clp1Q99LI9 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Gm18622-201ENSMUST00000219361 595 ntBASIC17.16■□□□□ 0.34
Clp1Q99LI9 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.16■□□□□ 0.34
Clp1Q99LI9 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.16■□□□□ 0.34
Clp1Q99LI9 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Clp1Q99LI9 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Gm5682-201ENSMUST00000173402 505 ntBASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms