Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nup88Q8CEC0 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Nup88Q8CEC0 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Nup88Q8CEC0 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Nup88Q8CEC0 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Nup88Q8CEC0 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Nup88Q8CEC0 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Nup88Q8CEC0 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nup88Q8CEC0 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Gm17808-201ENSMUST00000200859 894 ntBASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Nup88Q8CEC0 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Gm26039-201ENSMUST00000158152 144 ntBASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Nup88Q8CEC0 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Nup88Q8CEC0 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms