Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf3Q8C120 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf3Q8C120 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
Sh3rf3Q8C120 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.01■□□□□ 0.31
Sh3rf3Q8C120 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Gm29707-201ENSMUST00000196325 491 ntBASIC17■□□□□ 0.31
Sh3rf3Q8C120 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17■□□□□ 0.31
Sh3rf3Q8C120 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf3Q8C120 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf3Q8C120 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms