Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC018630.1-201ENST00000541376 925 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC007954.1-201ENST00000554198 494 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 BPTFP1-201ENST00000579209 492 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC245036.5-201ENST00000596330 847 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC104307.1-201ENST00000616142 196 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC006213.5-201ENST00000619673 288 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC007275.1-201ENST00000621243 671 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC132825.7-201ENST00000638744 335 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 AC091564.4-201ENST00000533934 2194 ntBASIC2.58□□□□□ -2
USH1CQ9Y6N9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USH1CQ9Y6N9 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
USH1CQ9Y6N9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USH1CQ9Y6N9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.57□□□□□ -2
USH1CQ9Y6N9 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.57□□□□□ -2
USH1CQ9Y6N9 MIR422A-201ENST00000362286 90 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 RNA5SP252-201ENST00000391131 119 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 ARF4P3-201ENST00000397387 509 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 UBA52P6-201ENST00000399822 382 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 OR51A3P-201ENST00000413596 924 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 VN1R42P-201ENST00000424651 344 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 TRBV26-201ENST00000456572 344 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 PABPC1P3-201ENST00000469174 459 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 RPS29P26-201ENST00000477483 171 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 CBX3P3-201ENST00000508108 532 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 RNA5SP341-201ENST00000516261 117 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC124293.1-201ENST00000530034 493 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC106734.1-201ENST00000568646 663 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 SNORD39.3-201ENST00000584451 71 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 RPL23AP92-201ENST00000603609 255 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC008083.4-201ENST00000615076 444 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 SCARNA15.3-201ENST00000626315 122 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 SCARNA4.1-201ENST00000628597 123 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 CYP3A51P-201ENST00000633513 256 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 MFSD8-213ENST00000641134 1327 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AL512283.1-201ENST00000606756 1384 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC090740.1-201ENST00000623193 2262 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.57□□□□□ -2
USH1CQ9Y6N9 AC138915.1-201ENST00000565427 1685 ntBASIC2.57□□□□□ -2
USH1CQ9Y6N9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.56□□□□□ -2
USH1CQ9Y6N9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
USH1CQ9Y6N9 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
USH1CQ9Y6N9 SNORD56.4-201ENST00000363883 71 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 RNU1-140P-201ENST00000365040 165 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 AL138827.1-201ENST00000402666 306 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 FO393413.1-201ENST00000402892 195 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.56□□□□□ -2
USH1CQ9Y6N9 AC092447.6-201ENST00000414578 210 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.56□□□□□ -2
USH1CQ9Y6N9 ZFAND6P1-201ENST00000434138 605 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 RNFT1P2-201ENST00000443064 757 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 S100A11P2-201ENST00000467589 312 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.56□□□□□ -2
USH1CQ9Y6N9 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.56□□□□□ -2
USH1CQ9Y6N9 AC104229.1-201ENST00000561364 255 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 AC106782.4-201ENST00000568264 210 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 MIR5194-201ENST00000582634 120 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.56□□□□□ -2
USH1CQ9Y6N9 AL133507.1-201ENST00000605269 557 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 AC009318.4-201ENST00000620496 486 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.56□□□□□ -2
USH1CQ9Y6N9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.56□□□□□ -2
USH1CQ9Y6N9 TAB3P1-202ENST00000452645 1634 ntBASIC2.56□□□□□ -2
USH1CQ9Y6N9 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.56□□□□□ -2
USH1CQ9Y6N9 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 OR5T3-201ENST00000303059 1023 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH1CQ9Y6N9 RNA5SP139-201ENST00000364340 117 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 SNORA1.3-201ENST00000384676 136 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 MIR493-201ENST00000385254 89 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 U3.26-201ENST00000391236 204 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH1CQ9Y6N9 CYCSP45-201ENST00000402289 315 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC012497.1-201ENST00000429392 575 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC011816.1-201ENST00000441346 546 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms