Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MARK2P15-201ENST00000432204 2186 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RNA5SP502-201ENST00000362694 119 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-1249P-201ENST00000363237 111 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RNY1P12-201ENST00000364251 105 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-754P-201ENST00000391166 107 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 SNORD115-47-201ENST00000391226 86 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AL807761.1-201ENST00000417622 171 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RPS15AP12-201ENST00000419498 388 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 BEND7P1-201ENST00000422058 457 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 MTND1P2-201ENST00000430604 821 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RPS4XP4-201ENST00000443195 763 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 TPT1P14-201ENST00000448018 505 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC010655.1-201ENST00000449336 292 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 MTND2P24-201ENST00000453434 806 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC109327.1-201ENST00000471666 403 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC020893.1-201ENST00000502452 580 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC111000.3-201ENST00000508057 576 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-1095P-201ENST00000516148 108 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RNA5SP49-201ENST00000516450 115 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RNA5SP519-201ENST00000516480 119 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC103783.1-201ENST00000520506 373 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC022616.3-201ENST00000523940 148 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC007363.1-201ENST00000604736 620 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 MIR3688-2-201ENST00000636963 87 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC004520.1-201ENST00000608362 1413 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 RNA5SP505-201ENST00000364748 108 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 MIR1277-201ENST00000408536 78 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 RPS7P15-201ENST00000415804 584 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 ELOCP4-201ENST00000420090 333 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 RPL23AP38-201ENST00000423801 469 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 RPL35AP22-201ENST00000436855 335 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC122718.1-201ENST00000439448 744 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 RPL23AP20-201ENST00000447965 421 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 FAM133DP-201ENST00000464802 691 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 RPL7P23-201ENST00000493874 747 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC093824.1-201ENST00000508796 343 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 VWA8P1-201ENST00000510889 176 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC021146.1-201ENST00000511202 716 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC105233.3-201ENST00000531125 744 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AP000857.1-201ENST00000532151 543 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AL512310.1-201ENST00000548639 172 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AL157687.1-201ENST00000554853 619 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 RPS3AP4-201ENST00000555161 764 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AL360157.1-201ENST00000565962 87 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AL158211.4-201ENST00000606988 584 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 TUG1_1.1-201ENST00000610654 145 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AP000346.3-201ENST00000622821 210 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms