Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RN7SKP95-201ENST00000362860 303 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.373-201ENST00000365600 103 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.556-201ENST00000384677 113 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 MIR921-201ENST00000401133 56 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 LAP3P1-201ENST00000403648 294 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AL080315.1-201ENST00000406055 466 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 MIR1178-201ENST00000408396 91 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 OR2AM1P-201ENST00000422137 422 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 BX510359.3-201ENST00000422168 306 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RNU7-136P-201ENST00000458819 69 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.653-201ENST00000459091 95 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RPL23AP56-201ENST00000460778 453 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC010469.1-201ENST00000463864 576 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RPS26P28-201ENST00000470806 348 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RPL23AP65-201ENST00000475608 468 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 TRBV1-201ENST00000476502 284 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC068781.1-201ENST00000488231 618 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RNU4-29P-201ENST00000515943 174 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RNA5SP228-201ENST00000516232 133 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RNU6-864P-201ENST00000516256 108 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 MYL12AP1-201ENST00000518490 515 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 OR4T1P-201ENST00000554933 911 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 NCAPGP2-201ENST00000557911 754 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 MTCO3P23-201ENST00000561363 289 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 MIR3118-1-201ENST00000581787 76 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 PRR13P7-201ENST00000605538 430 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AL121932.1-201ENST00000605542 214 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC015813.4-201ENST00000610469 179 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC023509.5-201ENST00000617434 807 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC018926.3-201ENST00000618841 406 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AL022401.1-201ENST00000619498 108 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC138627.2-201ENST00000624202 601 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC105074.1-201ENST00000623380 3095 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AL445487.1-201ENST00000415694 1580 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AL049780.3-201ENST00000624612 1583 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 AC009229.4-201ENST00000623854 1947 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 SMG1P6-201ENST00000532337 2930 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC107027.3-201ENST00000565095 3473 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 MIR448-201ENST00000362131 111 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RNU6-1188P-201ENST00000363795 107 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RNU6-115P-201ENST00000364310 107 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.489-201ENST00000384410 101 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RNU6-178P-201ENST00000384631 104 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 SNORA19-201ENST00000384737 128 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 SNORD37.1-201ENST00000390968 65 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RN7SKP158-201ENST00000410453 326 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RNU6-193P-201ENST00000410977 107 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RPL23AP27-201ENST00000415161 451 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RPL7P10-201ENST00000417407 739 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC007283.2-201ENST00000424739 197 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RPL30P15-201ENST00000457129 321 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 snoU13.20-201ENST00000459180 104 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 MIR2053-201ENST00000459295 91 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC110794.1-201ENST00000505816 425 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.668-201ENST00000516233 93 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 SUMO2P20-201ENST00000520803 283 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC090312.2-201ENST00000582687 378 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC011487.3-201ENST00000593607 453 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC243654.2-201ENST00000612843 443 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC114546.3-201ENST00000623582 1734 ntBASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC39Q9UFE4 AC032011.1-201ENST00000611703 1549 ntBASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
CCDC39Q9UFE4 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms