Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.59□□□□□ -1.67
CHMP4AQ9BY43 AL161629.2-201ENST00000615347 275 ntBASIC4.59□□□□□ -1.67
CHMP4AQ9BY43 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.59□□□□□ -1.67
CHMP4AQ9BY43 OR5H6-203ENST00000642105 978 ntBASIC4.59□□□□□ -1.67
CHMP4AQ9BY43 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.59□□□□□ -1.68
CHMP4AQ9BY43 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 RNU1-105P-201ENST00000363470 161 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 RNU6-741P-201ENST00000383889 107 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 MIR670-201ENST00000390142 98 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 RNU6-1176P-201ENST00000390955 107 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AC069157.1-201ENST00000421749 137 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 HMGN2P31-201ENST00000432430 273 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 NDUFB1P1-201ENST00000435191 180 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 MTND5P14-201ENST00000441481 1267 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AC010099.1-201ENST00000455434 375 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 SNORA31.21-201ENST00000517180 77 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 ATP5F1P5-201ENST00000526403 760 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 GTF2IP22-201ENST00000554443 182 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AC068313.1-201ENST00000604028 1008 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 MIR92B-201ENST00000607575 96 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AL450489.1-201ENST00000612071 468 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AL392048.1-201ENST00000613946 534 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AC008443.7-201ENST00000622195 246 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 AP000676.4-201ENST00000624659 623 ntBASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CHMP4AQ9BY43 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 RNU6-1035P-201ENST00000384477 107 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AL356421.1-201ENST00000403255 413 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 RPL23AP69-201ENST00000431134 458 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 USP9YP24-201ENST00000434374 697 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC092573.2-201ENST00000434546 243 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC129850.1-201ENST00000436203 508 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 USP9YP17-201ENST00000444617 696 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AL358232.1-201ENST00000448030 501 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 RN7SL601P-201ENST00000471221 293 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AP002884.2-201ENST00000471647 395 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 RNY4P37-201ENST00000516225 96 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC023161.2-201ENST00000551218 780 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 OR4H12P-201ENST00000556269 907 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 MIR3944-201ENST00000581277 108 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC006557.5-201ENST00000603126 811 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC090186.1-201ENST00000605991 572 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC119674.1-207ENST00000641355 633 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AC007823.1-201ENST00000569932 1566 ntBASIC4.57□□□□□ -1.68
CHMP4AQ9BY43 AL049641.1-201ENST00000441055 1948 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 Y_RNA.408-201ENST00000383987 102 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 SNORA36C-201ENST00000384289 132 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 RPL23AP29-201ENST00000397284 453 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC008850.1-201ENST00000427546 362 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC073063.1-201ENST00000434352 607 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 SKP1P1-201ENST00000438081 489 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 TRIM60P18-201ENST00000441518 828 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC007967.1-201ENST00000455422 1159 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 RNU6-150P-201ENST00000516237 95 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 RNA5SP143-201ENST00000516936 115 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC090132.2-201ENST00000615881 347 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC073308.1-201ENST00000623696 305 ntBASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 UGP2-231ENST00000627474 264 ntTSL 5 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms