Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 RBM6-203ENST00000421682 684 ntTSL 2 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 AC245100.2-201ENST00000454544 1679 ntBASIC1.72□□□□□ -2.13
VPS13AQ96RL7 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC1.71□□□□□ -2.13
VPS13AQ96RL7 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.71□□□□□ -2.13
VPS13AQ96RL7 RPS15AP36-201ENST00000492022 382 ntBASIC1.71□□□□□ -2.13
VPS13AQ96RL7 RNA5SP476-201ENST00000516613 103 ntBASIC1.71□□□□□ -2.13
VPS13AQ96RL7 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC1.71□□□□□ -2.13
VPS13AQ96RL7 AC103987.3-201ENST00000582071 292 ntBASIC1.71□□□□□ -2.13
VPS13AQ96RL7 ZNF720P1-201ENST00000562403 1939 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 MIR6073-201ENST00000352083 89 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 Y_RNA.68-201ENST00000362881 102 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 AC073136.2-201ENST00000417282 849 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS13AQ96RL7 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.71□□□□□ -2.14
VPS13AQ96RL7 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS13AQ96RL7 AC136443.5-201ENST00000603741 370 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 RNU6-1080P-201ENST00000383982 107 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 AMD1P1-201ENST00000457220 922 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.71□□□□□ -2.14
VPS13AQ96RL7 AC007536.1-201ENST00000533382 349 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.71□□□□□ -2.14
VPS13AQ96RL7 OR10AB1P-201ENST00000609613 938 ntBASIC1.71□□□□□ -2.14
VPS13AQ96RL7 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
VPS13AQ96RL7 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS13AQ96RL7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
VPS13AQ96RL7 UBE2V1P6-201ENST00000430840 422 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS13AQ96RL7 AC109464.2-201ENST00000510242 943 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 AC107393.1-201ENST00000512403 346 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.7□□□□□ -2.14
VPS13AQ96RL7 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
VPS13AQ96RL7 AC022336.2-201ENST00000568966 2538 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
VPS13AQ96RL7 MTCYBP7-201ENST00000419540 1134 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC1.7□□□□□ -2.14
VPS13AQ96RL7 uc_338.5-201ENST00000611839 155 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 MIR6734-201ENST00000621166 68 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.7□□□□□ -2.14
VPS13AQ96RL7 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 AC079804.2-201ENST00000490376 200 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 AL031274.2-201ENST00000599419 203 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 UBE2L2-201ENST00000254302 429 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 RNU6-1032P-201ENST00000384100 107 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 EIF2S2P4-201ENST00000461070 984 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 CBX3P5-201ENST00000552017 521 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 AC006254.3-201ENST00000603353 884 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 MTND5P12-201ENST00000502851 1449 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS13AQ96RL7 RNU6-60P-201ENST00000364792 103 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 CKAP2P1-201ENST00000555477 2049 ntBASIC1.69□□□□□ -2.14
VPS13AQ96RL7 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.68□□□□□ -2.14
VPS13AQ96RL7 MYL12BP1-201ENST00000569826 507 ntBASIC1.68□□□□□ -2.14
VPS13AQ96RL7 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS13AQ96RL7 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC1.68□□□□□ -2.14
VPS13AQ96RL7 SNORD53B-201ENST00000577887 78 ntBASIC1.68□□□□□ -2.14
VPS13AQ96RL7 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS13AQ96RL7 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
VPS13AQ96RL7 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
VPS13AQ96RL7 ZNF355P-201ENST00000427301 3216 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 XKRY2-201ENST00000442362 1093 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AF131216.2-201ENST00000512316 564 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 FAM92A1P1-201ENST00000528023 890 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC104581.2-201ENST00000572227 430 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 OR4G1P-203ENST00000641984 1631 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 RNY1P4-201ENST00000384595 115 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC008571.1-201ENST00000467232 300 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC107294.3-201ENST00000609211 526 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS13AQ96RL7 AC099654.11-201ENST00000638857 294 ntBASIC1.67□□□□□ -2.14
VPS13AQ96RL7 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms