Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC013437.2-201ENST00000639587 677 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 CR383658.2-201ENST00000547576 1525 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC103988.1-201ENST00000566382 2177 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 SKINT1L-201ENST00000401057 817 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AL136116.1-201ENST00000403591 381 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 TRIAP1P1-201ENST00000427062 225 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AL353691.1-201ENST00000451332 387 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC234775.1-201ENST00000454247 670 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC109925.1-201ENST00000478069 331 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC113347.3-201ENST00000509113 148 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AL359273.1-201ENST00000510918 627 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC010376.1-201ENST00000522101 334 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC011260.1-201ENST00000578420 472 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AL022067.1-201ENST00000602426 454 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC073657.2-201ENST00000605661 303 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC024060.1-201ENST00000607052 494 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC023158.2-201ENST00000614876 543 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC009464.1-201ENST00000615731 469 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC123767.1-202ENST00000620407 817 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC104985.3-201ENST00000623479 597 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 AC009812.4-201ENST00000569134 1805 ntBASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HDDC3Q8N4P3 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 PWAR6-201ENST00000552334 4618 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 DEFB108F-201ENST00000344638 222 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 RNU4-51P-201ENST00000364206 140 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 DHFRP6-201ENST00000401776 268 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 CCDC58P2-201ENST00000417131 366 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 NDUFB4P6-201ENST00000436819 366 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 MTND4P6-201ENST00000438297 472 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 SDCBPP1-201ENST00000440192 890 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 MTND2P20-201ENST00000440805 661 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC025750.2-201ENST00000442609 450 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AL031183.1-201ENST00000457667 207 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AL049714.1-201ENST00000466686 347 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC107934.2-201ENST00000518653 310 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC103783.1-201ENST00000520506 373 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 DEFB108D-201ENST00000527787 222 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC118942.1-201ENST00000529674 1035 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AP002404.1-201ENST00000532005 451 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC090079.2-201ENST00000575289 768 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 MIR4425-201ENST00000580572 84 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AL606834.3-201ENST00000602615 496 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 RMST_8.1-201ENST00000610287 165 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC022509.4-201ENST00000621404 572 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC011330.2-201ENST00000621680 635 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 AC007998.5-201ENST00000622938 237 ntBASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDDC3Q8N4P3 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 FRG1BP-201ENST00000278882 761 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.3□□□□□ -1.88
HDDC3Q8N4P3 CD24P4-201ENST00000382840 243 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms