Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC027673.1-201ENST00000456245 405 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RPS18P6-201ENST00000476880 458 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 HSPD1P15-201ENST00000505573 1122 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 ARL2BPP6-201ENST00000512757 439 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL157687.1-201ENST00000554853 619 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL512360.1-201ENST00000555346 234 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 MIR3921-201ENST00000577308 85 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 MIR4801-201ENST00000582704 82 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 BDH2P1-201ENST00000602288 736 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC067959.1-201ENST00000604334 379 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC008536.2-201ENST00000607284 349 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC006023.2-201ENST00000609916 167 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RNA5SP440-201ENST00000612665 119 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC010928.1-201ENST00000592477 1447 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
CCDC28AQ8IWP9 AC108467.2-201ENST00000617640 1597 ntBASIC3.84□□□□□ -1.8
CCDC28AQ8IWP9 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-1322P-201ENST00000364309 107 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.367-201ENST00000365544 101 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.402-201ENST00000383972 102 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RNU1-77P-201ENST00000390868 162 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-780P-201ENST00000391030 104 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 SNORD115-47-201ENST00000391226 86 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 MIR1182-201ENST00000408363 97 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RNU2-71P-201ENST00000411395 189 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 HMGB3P20-201ENST00000417997 600 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 EIF1P3-201ENST00000423841 334 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL138799.3-201ENST00000438968 350 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL356535.1-201ENST00000440335 398 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 FGF7P6-202ENST00000451282 293 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 SETP20-201ENST00000457046 852 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC079804.1-201ENST00000461922 436 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RN7SL443P-201ENST00000464331 290 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL121769.1-201ENST00000469473 401 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC126389.1-201ENST00000477436 290 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC083982.1-201ENST00000485679 344 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 VN1R105P-201ENST00000486595 910 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RN7SL547P-201ENST00000490793 290 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RPS27AP13-201ENST00000498403 237 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC117522.1-201ENST00000509821 380 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 SNORD27.1-201ENST00000516319 72 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RNU2-58P-201ENST00000516403 183 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.719-201ENST00000517156 106 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL049779.2-201ENST00000553847 315 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL355836.1-201ENST00000555951 870 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 NCAPGP2-201ENST00000557911 754 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 MIR3614-201ENST00000581261 86 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC087783.2-201ENST00000605070 562 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL109618.2-201ENST00000605527 211 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AL121992.2-201ENST00000606262 256 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AP002826.1-201ENST00000608835 315 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 RPSAP73-201ENST00000614820 330 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms