Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6-717P-201ENST00000459076 104 ntBASIC2.53□□□□□ -2
USP54Q70EL1 NAMPTP2-201ENST00000505629 1115 ntBASIC2.53□□□□□ -2
USP54Q70EL1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP54Q70EL1 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.53□□□□□ -2
USP54Q70EL1 AC234775.3-201ENST00000564612 656 ntBASIC2.53□□□□□ -2
USP54Q70EL1 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
USP54Q70EL1 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USP54Q70EL1 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USP54Q70EL1 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.53□□□□□ -2
USP54Q70EL1 RNU6-661P-201ENST00000362409 107 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.53□□□□□ -2
USP54Q70EL1 MT-TP-201ENST00000387461 68 ntBASIC2.53□□□□□ -2
USP54Q70EL1 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.53□□□□□ -2
USP54Q70EL1 RPL23AP39-201ENST00000415533 405 ntBASIC2.53□□□□□ -2
USP54Q70EL1 FNDC3CP-201ENST00000420795 1155 ntBASIC2.53□□□□□ -2
USP54Q70EL1 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.53□□□□□ -2
USP54Q70EL1 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.53□□□□□ -2
USP54Q70EL1 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.53□□□□□ -2
USP54Q70EL1 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.6-201ENST00000603753 252 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.11-201ENST00000604059 253 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.10-201ENST00000604330 253 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AC008162.1-201ENST00000604718 254 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.1-201ENST00000604752 252 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.2-201ENST00000604983 252 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.5-201ENST00000605253 252 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.4-201ENST00000605279 254 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.12-201ENST00000605291 253 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.8-201ENST00000605353 252 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.9-201ENST00000605428 253 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL670379.7-201ENST00000605823 252 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL355816.1-201ENST00000607951 118 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AC034102.8-201ENST00000615146 484 ntBASIC2.53□□□□□ -2
USP54Q70EL1 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.53□□□□□ -2
USP54Q70EL1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP54Q70EL1 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.52□□□□□ -2.01
USP54Q70EL1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.52□□□□□ -2.01
USP54Q70EL1 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
USP54Q70EL1 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP54Q70EL1 RNA5SP190-201ENST00000365222 118 ntBASIC2.52□□□□□ -2.01
USP54Q70EL1 MIR489-201ENST00000384923 84 ntBASIC2.52□□□□□ -2.01
USP54Q70EL1 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.52□□□□□ -2.01
USP54Q70EL1 AL009174.1-201ENST00000426577 416 ntBASIC2.52□□□□□ -2.01
USP54Q70EL1 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.52□□□□□ -2.01
USP54Q70EL1 AC011753.1-201ENST00000451001 220 ntBASIC2.52□□□□□ -2.01
USP54Q70EL1 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.52□□□□□ -2.01
USP54Q70EL1 AC111000.5-201ENST00000506559 1178 ntBASIC2.52□□□□□ -2.01
USP54Q70EL1 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.52□□□□□ -2.01
USP54Q70EL1 DNAJC19P9-201ENST00000555084 351 ntBASIC2.52□□□□□ -2.01
USP54Q70EL1 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.52□□□□□ -2.01
USP54Q70EL1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.52□□□□□ -2.01
USP54Q70EL1 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP54Q70EL1 AF127577.6-201ENST00000623352 2191 ntBASIC2.52□□□□□ -2.01
USP54Q70EL1 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP54Q70EL1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.52□□□□□ -2.01
USP54Q70EL1 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
USP54Q70EL1 RNU6-697P-201ENST00000363348 107 ntBASIC2.51□□□□□ -2.01
USP54Q70EL1 SET-203ENST00000372688 801 ntTSL 2 BASIC2.51□□□□□ -2.01
USP54Q70EL1 AP1B1P2-201ENST00000416196 106 ntBASIC2.51□□□□□ -2.01
USP54Q70EL1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.51□□□□□ -2.01
USP54Q70EL1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.51□□□□□ -2.01
USP54Q70EL1 SNX5P1-201ENST00000505757 1041 ntBASIC2.51□□□□□ -2.01
USP54Q70EL1 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.51□□□□□ -2.01
USP54Q70EL1 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.51□□□□□ -2.01
USP54Q70EL1 AP004242.1-201ENST00000533701 349 ntBASIC2.51□□□□□ -2.01
USP54Q70EL1 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.51□□□□□ -2.01
USP54Q70EL1 AC084373.1-201ENST00000603311 235 ntBASIC2.51□□□□□ -2.01
USP54Q70EL1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.51□□□□□ -2.01
USP54Q70EL1 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
USP54Q70EL1 AL118496.1-201ENST00000440201 1812 ntBASIC2.51□□□□□ -2.01
USP54Q70EL1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
USP54Q70EL1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
USP54Q70EL1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
USP54Q70EL1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
USP54Q70EL1 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
USP54Q70EL1 AL450338.1-201ENST00000407987 512 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 HSPE1P28-201ENST00000443139 211 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC009237.8-201ENST00000445492 379 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 CALM1P2-201ENST00000452941 448 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC025033.1-201ENST00000463883 194 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC079804.2-201ENST00000490376 200 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC108078.2-201ENST00000510750 236 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 RN7SKP82-201ENST00000516786 223 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 RNU6-250P-201ENST00000516958 103 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.5□□□□□ -2.01
USP54Q70EL1 MIR4303-201ENST00000581299 66 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 MIR4278-201ENST00000636094 69 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP54Q70EL1 AC004520.1-201ENST00000608362 1413 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 METTL21EP-201ENST00000298105 713 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 RNA5SP160-201ENST00000364866 120 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC109583.1-201ENST00000432156 268 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 UBE2V2P1-201ENST00000434717 398 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 HMGB1P12-201ENST00000438594 598 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 RPL23AP76-201ENST00000441860 458 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AL590664.1-201ENST00000448065 339 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC005840.1-201ENST00000498412 377 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 MTATP6P22-201ENST00000507369 598 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 AC107393.1-201ENST00000512403 346 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms